Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01280 ATGGAAGAGATAACGGTGAATGGAAAAAGTTCAGGCCTTCTATGGATAAAGGAGGAGACTCCAACCAGAACCCTAGTCTGTTTTAGAAAAGAGGACATGAAACGTTTCGAGGAAACTGAGGATTGTTTCATCTTAGATTTCGACCCATATGACTCATTCGACTTCTCCGTGCTTTCCTTGGACGACAAAAATAACCACCAAGGTGATGCCTCTAAAGATGTCTACATTGTTGGTGAAAACAGTAAGGTAAATATCTACAAAAACCTGCCTCACATATTAAGATTTTACTTCAGTATGTATTACAGTATGCTTAACCCTCCCACAATTGATGTCGCTGCATTGCTTGAAAGGTATGCTGTAGTTGGAGGGATTACCCTCATCCAAGACATCTGTGTATTAAATTTCCGTTTACCGCAACACCTCACGATAGCTATTGTGAACTGTGTTACTGTCGTGTATGTGGCATACGTGCTCCTTGTAAGCATTGGACCCGATCAACGTCTCCACACTGTGATGAAGTCTATCATAGGGATATTTTTGCAGATTTGTTTGAAGTTTTATGATGGTGTGTGCATGGGGAATGGGGTGCTTTATCAGCTTCAAATTTTGCTTTTCTGTGTGTCCAGAATCACCTTATGGATAATCCCCATTTGCAACTGTGGTGAGATGATAGTAGTAAAAATGGCTAGAACTTCAAAGAATGCGGGAAGATATTTTTGGGGTTGTCGTAACTACAAGAGTGAAGCTGGTAATGCGATGTGTTGCAACTATTTCAAGTGGTGCAATGAAGAAAATCTTGATGAAATGGATGTTATTATTGGGAGGCAAAGGAGGAAGATTTATGATCTGGAAAACACAGTCAAAGCTTTGAAGAAAAGGATCCAAATATTAGTAGTAGTGGCTGGTGTTGTTAGTGTAGTGAACATAGTTATGTCAATGGAGTTGAACTACTGTAATGTTAAGGTGACAGCCCTAAAAATTTTTAATTTTTCCACCATATCCTCTTTGCCGGAATCCAACACAACCGACCCGGAGCTCCTCTTCAAGCTCTCGCTACGCGTCGCCATTGACGAGCTCTCCAAGCTCTCCAACTTCCCTTCCAAGCTCCGTGCCAATGCAGAACATGATGCGCGTCTGCAGAAGGCGATCAACGTCTGCAGTTCCGTCATCGGTGACGCGTTGGACCGCCTCAACGATTCCATCTCCGCGCTCGGAACCGTCACCAGAAGGATTGTTTCTTCGACGAGCGTCAACGACGTGGAGACGTAG 1269 0.4318 MEEITVNGKSSGLLWIKEETPTRTLVCFRKEDMKRFEETEDCFILDFDPYDSFDFSVLSLDDKNNHQGDASKDVYIVGENSKVNIYKNLPHILRFYFSMYYSMLNPPTIDVAALLERYAVVGGITLIQDICVLNFRLPQHLTIAIVNCVTVVYVAYVLLVSIGPDQRLHTVMKSIIGIFLQICLKFYDGVCMGNGVLYQLQILLFCVSRITLWIIPICNCGEMIVVKMARTSKNAGRYFWGCRNYKSEAGNAMCCNYFKWCNEENLDEMDVIIGRQRRKIYDLENTVKALKKRIQILVVVAGVVSVVNIVMSMELNYCNVKVTALKIFNFSTISSLPESNTTDPELLFKLSLRVAIDELSKLSNFPSKLRANAEHDARLQKAINVCSSVIGDALDRLNDSISALGTVTRRIVSSTSVNDVET 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01280 422 Pfam GRF zinc finger 216 263 IPR010666 GO:0008270
Vian4g01280 422 PANTHER ZINC ION-BINDING PROTEIN 211 312 - -
Vian4g01280 422 ProSiteProfiles Zinc finger GRF-type profile. 218 264 IPR010666 GO:0008270
Vian4g01280 422 Pfam Plant invertase/pectin methylesterase inhibitor 328 411 IPR006501 GO:0004857
Vian4g01280 422 Coils Coil 273 293 - -
Vian4g01280 422 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 331 407 IPR035513 -
Vian4g01280 422 CDD PMEI-like_3 330 422 - -
Vian4g01280 422 Gene3D Invertase/pectin methylesterase inhibitor family protein 318 422 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01280 Vian-Chr4 25858482 25863999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01280 331 422 Carbohydrate Esterase AT1G53840 51.613 1.13e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01280 - - var:108331388 171.014