Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01274 ATGAGTTCCCTCGAGTGTTATTCGTCGCGCGGGGACGATGTCGCCATCGTGTCGCTGGATTCTCTACCGTTAGGGTTCCGATTCAGACCTTCCGACGAGGAACTCGTCGATTACTACCTGCGGCAGAAGATTAACGGCAATGGTGCCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCGTGGGACATGCCTGATTTGTCGGTGATACGGAACAAGGATCCGGAATGGTTCTTCTTCTGTCCACAGGACAGAAAGTACCCAAATGGGCATCGATTGAACAGAGCAACTAGTCATGGGTATTGGAAGGCGACCGGGAAGGATCGTAAAATAAAGTCTGGGATGATTTTGATTGGAATGAAGAAGACTTTGGTGTTCTACACTGGTCGTGCACCCAAAGGGAAGAGGACCAATTGGGTTATGCATGAGTATCGCCCCACCTTGAAGGAGCTTGATGGCACCAATCCTGGACAGAATGCATATGTCCTTTGTCGCTTGTTTAAAAAACATGATGAGAGCCTTGAAGTTTCGCACTGTGATGAGGCAGAACAGATTCCTTCAACTCCGATTGCTGCCAATTACTCTACGGAGGAAATACAGTCGGGTCTGGGTGTTGTTGCATTGTCCCCATCCCTTGTTACAGAAGACGATAAGCACCAGACAATTGTCCCTACGCACTCTGAGGAAGCAATATCCAACGTTATAACTCCGGTTGATTGCCATAGTGATGGATATGATGCTTCTGATGCACAAGATAAATATTTGGCACCAGCTGCAGAGGAGTTTCAGCCATGGAACGTTGATATGTATTACGACCCGAAAAACGAGCTCTTGGATGACAAGTTATTCTCCCCTGAACTTGCACTTGTTCAACCAGAATTTCATTATCAACCAAACAGTGAATCAGATAGTCGGTATGGGCTTCAATATGGCACTAATGAGACAAACATTTCAGACTTTTTAAATTCTGTTGTTAACTGGGACGAACTACCCTACGAGGAGTCCAATTGTCAACAGCGGACCTACCCCTCGTTTAATGTTCAGAATAGCGCATTAGGCAGCGATATAGATTCTGAACTTGCCAATATAATATATATGCAAGCTGGTTACGCTGAGGAGGCAAACGACAGAAAGATTCCTTTGGTGATAGCTCCAGAATTTTGCAGCACCACTGGCATCCCCATTGCCCGTGGTGGTGATGAGCAGAAGAGCAATGTTGAGTTATTTCAAAGCATTTCCCAGAGAGATTTTCCTGATGTCAATATGGGCCAAGTATACAATGTAGTCCATGATTATCCGCCACCCAGAATCTATAATACCGTTCCTAGTGGGGATACCGGAATCATTAGAAGGACTAGAGTGGTTCAAACTGAAAAGCTAAGTGCAAACGTAACACAGGGTACAGCACAGAGGAGAATTCGTTTGGCGCAGAAGGCGCAAAATAAGATGGTGAAAAAAGAGCTTGATTCAAAACCAATCATCGCTGTGGAGGAGAAAGCTTCAGAAAACCATGTTTCGGATGGAAGTGCTACGCTTACTAATGATGGGAATGAACTGCAGAAGACACCAGAGGCAAATGGCAATAGAAAGATTTCTCGTCAAGTTGCAAAAGCAAGTTCTACCTTTGGGTTGAAAGATTTTTTATTGCTCAGAAGAGTGCCATACATTTCAAAGGCTGCCTCCAATCGTACCAAGTGCTCTTCTATTTTTGTAGTTTCTGCCTTTCTAATGGTCTCATTAGTGGTCTTTACTGACATCTGCGGATATCTTAAATTCTAA 1788 0.4463 MSSLECYSSRGDDVAIVSLDSLPLGFRFRPSDEELVDYYLRQKINGNGAEVWVIREIDVCKWEPWDMPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRKIKSGMILIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKHDESLEVSHCDEAEQIPSTPIAANYSTEEIQSGLGVVALSPSLVTEDDKHQTIVPTHSEEAISNVITPVDCHSDGYDASDAQDKYLAPAAEEFQPWNVDMYYDPKNELLDDKLFSPELALVQPEFHYQPNSESDSRYGLQYGTNETNISDFLNSVVNWDELPYEESNCQQRTYPSFNVQNSALGSDIDSELANIIYMQAGYAEEANDRKIPLVIAPEFCSTTGIPIARGGDEQKSNVELFQSISQRDFPDVNMGQVYNVVHDYPPPRIYNTVPSGDTGIIRRTRVVQTEKLSANVTQGTAQRRIRLAQKAQNKMVKKELDSKPIIAVEEKASENHVSDGSATLTNDGNELQKTPEANGNRKISRQVAKASSTFGLKDFLLLRRVPYISKAASNRTKCSSIFVVSAFLMVSLVVFTDICGYLKF 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01274 595 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Vian4g01274 595 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Vian4g01274 595 FunFam Nac domain-containing protein 86 31 175 - -
Vian4g01274 595 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Vian4g01274 595 MobiDBLite consensus disorder prediction 508 535 - -
Vian4g01274 595 SUPERFAMILY NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
Vian4g01274 595 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 254 - -
Vian4g01274 595 MobiDBLite consensus disorder prediction 503 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01274 Vian-Chr4 25731811 25734938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01274 13 328 NAC Transcription Factor Family AT3G49530 48.348 1.45e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian4g01274 NAM 7.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01274 - - gmx:100777071 931.784