Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01252 ATGGTGGAAAGTGTTGGTGATGATGAGCATAAGAAGAAGAAGGAGGTTAAGAGTCTGGCATTCTTGAAACTGTTGAGCTATGCTGACATGGTGGATTGGATTCTGATGGGTTTGGGAAGTGTTGGTTCCATTGTGCATGGCATGGCACTTCCTGTGGGGTATCTGTTGTTGGGAAAAGCTCTTGATGCTTTCGGAAACAATATTGAAGACATAGATGCCATGGTTAAGGCTCTTAAAAAGATTGTTCCATTTGTCTGGTATATGGCCATAGCCACATTTCCTGCTGGGGTACTTGAAATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTGCGGCTAAGATTAGCATATCTGAGAGCAGTTCTTAACCAAGAGATAGGAGCTTTTGATACAGAGCTAACAACTGGGAAAGTCATCAGTGGAATAAGCAACCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTGCAATATGCTGTTGGGAAGTGGCGCTTTTATGTTTAGTGGTTGTCCCACTTATTCTTATAATTGGGGCAACTTACACCAAGAAAATGAACAACATATCAACCACCAAAATGCTTTTCCATTCTGAAGCTACATCTATGATAGAGCAGACAATATCACAAATAAAAACAGTTTATGCTTTTGTTGGAGAGAGCTCCGAAATCAAATCCTTTACAGAGAACATGGATAAGCAATATATTATAAGCAAAGGGGAGGCACTTGTGAAAGGAGTTGGAACAGGGATGTTGCAAACAGTGAGTTTCTGTTCTTGGGCTTTCATTGTATGGGTTGGAGCTGTTGTGGTCAGAGCAGGAAGAGCAACAGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTCTTTGGTGCCATATCACTCACTTATGCAGCACCAGACATGCAAGTATTCAATCAGGCAAAAGCTGCAGGATATGAAGTTTTCCAAGTGATCCAAAGAAAGCCTCTGATAAGTAATGAATCAGAAGGGAAGATGCCTAGCAGAATCAAAGGAGTTATCTTTATTGATGGTCAGAATATCAAGGATCTTAATCTGAAGTTCCTTCGACGAAACATAGGGGCCGTTTCCCAAGAGCCATCACTCTTTGCAGGCACCATCGAGGATAACTTGAAAGTGGGGAAAATGGACGCAGATGATCAAGAGATTCAGAAGGCAGCTGTAATGTCAAATGCACACTCTTTCATATCTCAGCTGCCTAATCAGTACCTGACCGAGGTTGGAGAAAGGGGCGTCCAATTATCAGGAGGCCAAAAACAGAGAATTGCAATAGCCAGAGCCATTCTTAAAAATCCTCCTATCCTTTTGCTTGATGAAGCCACTAGCGCCCTCGATTCAGAGTCTGAAAAGCTGGTTCAAGAAGCACTTGAGTCAGCTACGCAGGGAAGGACTGTCATCTTGATCGCACACAGGCTCTCAACAGTTGTAAATGCAGATATCATTGTTGTAGTCGAGAATGGACAAGTTGCGGAGACAGGAACACACCAGAGTTTGTTAGACACAAGCAGATTCTATAGTACATTATTTAGCATGCAGAACCTTGAACTAGTTGCTGAACCCAGAGCTACGATTTCAAAGACTAAAAGTGCCCGCCAAGAAGATTTTCCTACTGAAACTAGACCACCAGTAGAAGTGCAGGGAGAGGTCCAAAAGAATATTACCGAGCACTCTGTGCTAAAGGAACACAACAAAATGGGCAGCGGAAAAAGAAATATATTTTTCAGAATTTGGTTTCGTCTTAGAAAGAGGGAGCTAGTGAAGGTTTCTATTGGCTCAATTGCAGCAGCTTTCTCTGGTATCTCAAAGCCATTTTTTGGGTTTTTCATCATCACCATAGGAGTAGCATACTTTAAGGAAGATGCAAAAACGAAAGTTGGACTTTATTCAGCCATCTTCACTGCAGTAGGGATGCTTTCATTATTCAGCCACACCGTCCAGCATTACTTATTTGGAGTGGTTGGAGAAAAGGCCATGGCAAATCTCAGACGTGCTCTGTATTCAGGTCTGCTACGTAATGAAGTAGGTTGGTTTGACAAATCAGAGAATACTGTTGGTTCATTGACTTCACGCGTTATCAGTGACACTGCCATGGTCAAAGTAATCATTGCTGATCGAATGTCTGTAATCCTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGGTTGTCAACTGGAGAATGAGTTTGGTAGCTTGGTCTGTGATGCCCTGCCACTTCATAGGTGGTCTTATTCAAGCCAAGTCTGCCAAAGGATTTTCTGGTGACTACTCTGCAGCACATTCTGAGCTTGTTGCTCTTGCATCCGAGTCTACAACCAACATAAGGACTATTGCCTCATTTTGTCATGAAGAACAAGTATTGAGGAAAGCCAAAACATCCCTAGAAATTCCAAAGAAAAAGTATAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTATGGAACATTGCACATGCTGTTGCTCTGTGGTACACAACAATTCTGGTTGACAGACGTCAAGCCAGCTTTGAAAATGGAATAAGGTCATACCAAATTTTTTCTCTCACAGTTCCTTCTATCACAGAATTATACACGCTGATCCCAACTGTCATCTCGGCTATCAATATACTGACCCCAGCATTCAAAACCCTTGATCGTAAAACTGAAATTGAACCAGACACACCAGATGATTCACAACCAGAGAGGATCCAAGGAAATGTAGAATTTGAAAATGTAAAATTTAACTACCCTTCAAGACCCGAAGTCACCGTTCTTGATAATTTCAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTTGGACCAAGTGGAGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTACGATTTTATGATCCACAGGGAGGAAAGGTGTTAATTGATGGAAAAGACATAGGGAAATATAATCTAAGATGGTTAAGGACACAAATAGGACTAGTACAACAAGAACCACTGCTTTTTAATTGCTCAATCAGAGACAACATTTGCTATGGCAATAATGTGGCTTCTGAAAGTGAAATAGTGGAGGCTGCTAAAGAAGCAAACATACATGAATTTGTAAGTAATTTACCAAATGGATATAGCACTGTTGTTGGAGAGAAAGGCTGCCAGCTTTCCGGAGGTCAAAAGCAAAGAATAGCCATTGCCAGAACAATACTAAAGAAGCCTGCAATTTTACTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAGGAATTATAGTAAATGCCTTAAACGCAATACATCTGAAGGAAGACCGTGGATTGCGTTCAAGGACCACCCAGATAACAGTAGCTCATAGGCTTTCCACAGTGATAAACTCAGATACTATAATTGTCATGGACAAAGGTAAAGTTGTACAGATGGGTTCCCACTCGACCCTAATAACAGTAGAGTCAGGACTTTATTCAAGGATGTTCAGGTTACAGAGCTTCGAAGAAACTTCGTAG 3558 0.4157 MVESVGDDEHKKKKEVKSLAFLKLLSYADMVDWILMGLGSVGSIVHGMALPVGYLLLGKALDAFGNNIEDIDAMVKALKKIVPFVWYMAIATFPAGVLEIGCWMYASERQLLRLRLAYLRAVLNQEIGAFDTELTTGKVISGISNHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEVALLCLVVVPLILIIGATYTKKMNNISTTKMLFHSEATSMIEQTISQIKTVYAFVGESSEIKSFTENMDKQYIISKGEALVKGVGTGMLQTVSFCSWAFIVWVGAVVVRAGRATGGDIIAAVMSILFGAISLTYAAPDMQVFNQAKAAGYEVFQVIQRKPLISNESEGKMPSRIKGVIFIDGQNIKDLNLKFLRRNIGAVSQEPSLFAGTIEDNLKVGKMDADDQEIQKAAVMSNAHSFISQLPNQYLTEVGERGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALESATQGRTVILIAHRLSTVVNADIIVVVENGQVAETGTHQSLLDTSRFYSTLFSMQNLELVAEPRATISKTKSARQEDFPTETRPPVEVQGEVQKNITEHSVLKEHNKMGSGKRNIFFRIWFRLRKRELVKVSIGSIAAAFSGISKPFFGFFIITIGVAYFKEDAKTKVGLYSAIFTAVGMLSLFSHTVQHYLFGVVGEKAMANLRRALYSGLLRNEVGWFDKSENTVGSLTSRVISDTAMVKVIIADRMSVILQCVSSILIATVVSMVVNWRMSLVAWSVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESTTNIRTIASFCHEEQVLRKAKTSLEIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDTPDDSQPERIQGNVEFENVKFNYPSRPEVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPQGGKVLIDGKDIGKYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNVASESEIVEAAKEANIHEFVSNLPNGYSTVVGEKGCQLSGGQKQRIAIARTILKKPAILLLDEATSALDAESEGIIVNALNAIHLKEDRGLRSRTTQITVAHRLSTVINSDTIIVMDKGKVVQMGSHSTLITVESGLYSRMFRLQSFEETS 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01252 1185 CDD ABC_6TM_Pgp_ABCB1_D2_like 603 916 - -
Vian4g01252 1185 Pfam ABC transporter transmembrane region 38 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian4g01252 1185 Pfam ABC transporter transmembrane region 615 877 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian4g01252 1185 FunFam ABC transporter B family member 4 923 1184 - -
Vian4g01252 1185 SUPERFAMILY ABC transporter transmembrane region 23 341 IPR036640 GO:0005524|GO:0016020
Vian4g01252 1185 Gene3D ABC transporter type 1, transmembrane domain 23 348 IPR036640 GO:0005524|GO:0016020
Vian4g01252 1185 CDD ABC_MTABC3_MDL1_MDL2 933 1179 - -
Vian4g01252 1185 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 933 1177 IPR003439 GO:0005524
Vian4g01252 1185 FunFam ABC transporter B family member 28 349 539 - -
Vian4g01252 1185 ProSitePatterns ABC transporters family signature. 1072 1086 IPR017871 GO:0005524|GO:0016887
Vian4g01252 1185 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian4g01252 1185 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 333 - -
Vian4g01252 1185 Gene3D - 357 573 IPR027417 -
Vian4g01252 1185 Gene3D ABC transporter type 1, transmembrane domain 574 899 IPR036640 GO:0005524|GO:0016020
Vian4g01252 1185 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 289 536 IPR003439 GO:0005524
Vian4g01252 1185 Gene3D - 923 1184 IPR027417 -
Vian4g01252 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 537 IPR027417 -
Vian4g01252 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1179 IPR027417 -
Vian4g01252 1185 ProSitePatterns ABC transporters family signature. 439 453 IPR017871 GO:0005524|GO:0016887
Vian4g01252 1185 Pfam ABC transporter 354 467 IPR003439 GO:0005524
Vian4g01252 1185 PANTHER ABC TRANSPORTER B FAMILY 588 1178 IPR039421 -
Vian4g01252 1185 SUPERFAMILY ABC transporter transmembrane region 602 919 IPR036640 GO:0005524|GO:0016020
Vian4g01252 1185 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 615 898 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian4g01252 1185 SMART AAA_5 338 513 IPR003593 GO:0016887
Vian4g01252 1185 SMART AAA_5 960 1154 IPR003593 GO:0016887
Vian4g01252 1185 Pfam ABC transporter 951 1100 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01252 Vian-Chr4 25350916 25357715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01252 9 1184 Calmodulin-binding Proteins AT2G36910 38.498 0.0 843