Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01248 ATGGAGTCTCTGAAAGCAGCTATTCCAGAAAGTGTGAAGCGAGCGATAGGGGATAGCAATGTTGAAGATCTTCAAAGCACGTGCACTTTTCTTCATCGCTTCTTTCTCCACTTCGACCCATTTCACCAGATTATCGCTCAACTGGCTGATCCAAAGTATGGTCTGTGCGGTAAGAGTAAGGAAGATGCCTTGAAATCCAAGCAGCTTGGTAATGAATGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGACTGCTATACTCAGGCATTGCGCAAGGCTCCATTAGATGTTGGTGATATGAAAAGTAATCTTGTTGCAACATTATATATCAATCGAGCTACTGTATTGCATAGAATGAGTCTTTTAGTAGAATGCTTGCGGGATTGCACTCATGCTCTTCAAATTTGTCCAAGCTACGCCAAGGCATGGTACAGGAGAAGTAAGGCAAATGCTTCATTAGGAAATTATAGAAATGCAATTTGCGACCTAAATGTGGCCAAGATTCTGGAACCTTCAATGGGTGGAAAAAGACAAATAGAAGGTGAACTGAAAATTCTTTTAGACCAATGCAAGAGCACAAGTGCGATGGTACAGATACAACATAAGGAGAACAGCTGCAATACTGTGGGTGAGATGCCTCAAGTAAAGCTACAGTGTATCTCCATTCCTGATAAAGGAAGAGGCATGGTCTCATCATGTGTCATTTCACCGGGTTCTTTAGTTCATTCTGAAGAACCTTATGCTATGATAATTTTAAAGCAATGTCGGCAAACCCATTGCCATTATTGCCTGAATGATCTACCTGCTGATAGAGTTCCTTGTTTATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGATACGAGCAGGTGGGCAAATGTTCAGGATGTACCCAGAAAAAGATGACACTTTTAAAAAAATGCCCAGTGATCTTGGAGAATATGCTTCTGAAGTTATCCAAAGCAATGATTCTGAACAAGAAATTGAGGATATTACTGAACATAAACATGAATGCCGAGGTGTACATTGGCCTGTGGTACTGCCATCTGAGATAGTTTTGGCTGGCCGAATACTAGCAAGGTTTTTGCTGAATAGCACGTCTGATAGTATTATAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACATATGTCATCTGAAAGCAAATTGGATTCACACATATATGCCATTGTATTGTTGTATTGTCTTCAACACTCATGTGGAACCATGTTTTCCATAGACGGAGTCTCCATATCACAGGTTGTCATTATTATCTCTCAAATTAAAGTGAATTGTATGACCATTGTTCGTTTAAAATCAATTGATGCTCATGGACTATCAGGTCATTTTGGACAATTTCCATTAAAATCTGATGCACATTCAACTAGTAACGTGGAACAGGTCAGAGTGGGTAAAGCTATCTATAAAGCTGCCAGTTTATTTAACCATTCTTGCCGACCGAATGCTCATGCATATTTTCTTTCACGCACTCTTTACCTACGAATCACACATGGTGTAGCAGCTGGTTGTCAGCTAGAACTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAACTTTCTCAAAGATGAATATGCGTTTCATTGTCAGTGTATTGGTTGTTCAGAAGTCAATGTATCCGACATAGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTAGAAAGCAGAGTACATGACTGTGAGCAGCAGAAAATCAAGCACTTCACTATTACTGACCTTGTTGAAAAGAATGATGACATTTGTGAAGTATCTCTTAATGTCTTCAAACAAAACGGGGCCCATATTCATGGTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCTCATGCTGCAGTCAGTGAAGCTCTAATATGCATAAAAAGGTTGCAGGATGCAAAATCTTCAAAAGAAATTTCGCGTATTACTATTTCTGATGCTTTGATATCTCTTCAATCACTAAGATTAAATTTGCATGCTTACAACAAGCTTATTGCGGAGGCAGAAGACAGCATTGCTCAGGCTTTTTGTTTAGTACGAGAATTACAATTATCTGTTGATCATTGCAAAGCTTCTATCCAGATTCTGGAAAAGCTATACGATACTGATGATATTGTTATTGCTTACGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATTCTACTGCTATGGAAAGCATAAATCGAATAGATGATATCTTCTCACGTTATTATGGACGTCATGCAGACTTGGTGTTCCCTTATCTTCAATATCTTAGGGGAGAAATTGAGAAATTTTCAGTGAAGGCCATCCAATAA 2364 0.3951 MESLKAAIPESVKRAIGDSNVEDLQSTCTFLHRFFLHFDPFHQIIAQLADPKYGLCGKSKEDALKSKQLGNECFSNADYAKALDCYTQALRKAPLDVGDMKSNLVATLYINRATVLHRMSLLVECLRDCTHALQICPSYAKAWYRRSKANASLGNYRNAICDLNVAKILEPSMGGKRQIEGELKILLDQCKSTSAMVQIQHKENSCNTVGEMPQVKLQCISIPDKGRGMVSSCVISPGSLVHSEEPYAMIILKQCRQTHCHYCLNDLPADRVPCLSCSIPLYCSHQCQIRAGGQMFRMYPEKDDTFKKMPSDLGEYASEVIQSNDSEQEIEDITEHKHECRGVHWPVVLPSEIVLAGRILARFLLNSTSDSIINFVERLELSHCYKHMSSESKLDSHIYAIVLLYCLQHSCGTMFSIDGVSISQVVIIISQIKVNCMTIVRLKSIDAHGLSGHFGQFPLKSDAHSTSNVEQVRVGKAIYKAASLFNHSCRPNAHAYFLSRTLYLRITHGVAAGCQLELSYGPQVGLWDCKDRLNFLKDEYAFHCQCIGCSEVNVSDIVLNAFHCVNPNCSGAVLESRVHDCEQQKIKHFTITDLVEKNDDICEVSLNVFKQNGAHIHGQPGYCLKCGSYCDLESSHAAVSEALICIKRLQDAKSSKEISRITISDALISLQSLRLNLHAYNKLIAEAEDSIAQAFCLVRELQLSVDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDSTAMESINRIDDIFSRYYGRHADLVFPYLQYLRGEIEKFSVKAIQ 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01248 787 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 780 - -
Vian4g01248 787 Pfam SET domain 226 521 IPR001214 GO:0005515
Vian4g01248 787 SUPERFAMILY TPR-like 59 190 IPR011990 GO:0005515
Vian4g01248 787 Coils Coil 670 690 - -
Vian4g01248 787 Gene3D SET domain 228 258 IPR046341 -
Vian4g01248 787 Gene3D Tetratricopeptide repeat domain 42 202 IPR011990 GO:0005515
Vian4g01248 787 ProSiteProfiles SET domain profile. 215 521 IPR001214 GO:0005515
Vian4g01248 787 Gene3D - 259 291 - -
Vian4g01248 787 SUPERFAMILY SET domain 219 546 IPR046341 -
Vian4g01248 787 Gene3D SET domain 420 520 IPR046341 -
Vian4g01248 787 SMART tpr_5 140 173 IPR019734 GO:0005515
Vian4g01248 787 SMART tpr_5 685 718 IPR019734 GO:0005515
Vian4g01248 787 SMART tpr_5 106 139 IPR019734 GO:0005515
Vian4g01248 787 SMART tpr_5 63 96 IPR019734 GO:0005515
Vian4g01248 787 Gene3D Tetratricopeptide repeat domain 529 783 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01248 Vian-Chr4 25123440 25157500 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian4g01248 SET 9.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01248 K24634 - gmx:100783548 1345.49