Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01238 ATGGAATCGTCACCGTCGTCTTCGTCTTCCTCCTCGTTGTCGTCGTCTTCTGGAAGCGATGCCGGCGGTGGTGGCGCTCTCACGTGGTTCGGGATGAGTTTTCCGTTCCGTTCTCCGCTTTCTCTCGTGATGGATTACTGCACGCGCGAGGATTCCGCGGAGCCCGTGATTATCATTCCCCGGACGCGCCCGCGGTTTCAGGTGCCGGCTGAATCTGCTGCTTCTGTTTCGGCCTCTGACTCTGGCGATAATGTGTGCGGCGGCGCTGAGGAGGTGGCGATACGCATCATTGGGGCCGGCGAGCAAGAGAGCGGTTCGTCGCCGTCGTCATCGAGGAGCCGCGCTGGGGAACCGGGATGTGAGGAGGCGGCGGTGGTTGGGAGGAGCGGGATGCTGTCGTCGGAGGCTCGCCGGCGAATGGCTGAGGAGAGGGTGCCGTTGGTGTCTTTGGATGATGGGATTGGTGGCGGTAGGGATTCTTCTTCGTCTTCCTCTACCTACCAGAGGTATGATATTCAGCAGGTTGCGAAGTGGATTGAACAGATTCTTCCGTTCTCCCTCTTGCTGTTGATTGTTTTCATCCGCCAGCATTTGCAAGAGTTTGAGGATGTGGGTGAAGCAAGCCTGTCTTGGTTTTCTCGTGATGTGCTTGGTGGAATAATGGTTGGCCAGAGAAATGCTGCTTGCTGTTTTGAGGGACGGAAGCTGGAAAGAAGAATTGTGGTTTGTTTTATTGAGTTGATTGGTTCTACTGTATTGAGTGGCAGTTTCTTTGTCACAATTTGTATATCTGCTGTGATGTTCAAGTCAAATGAAATTGTTAAAAAGCAGACTGCCTTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTATGCTGCATGTTATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAGACAAGTCCACCTTTCTGGCATACAATATTCATCATTTTGGTTAACGATACATTGGTGAGGCAAGCAGCAATGGCTTTGAAGTGTTTATTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTTCGTCGGCAGGGTCAAATGTTAACTCTGATTGAGTACACTCTTCTGCTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGCCTGTTTTCCTCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCAGTTGTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCTACAACAGAACAGGTGAGTGCCGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGCGAAGAGTGTGTATCTGAATGGTTTGAGAGAGAACGGACTTGCCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTTCGGACCTTTGGAGATGGATCAACAAGCCTATTTTTTCAGCTGTTTTAA 1554 0.4813 MESSPSSSSSSSLSSSSGSDAGGGGALTWFGMSFPFRSPLSLVMDYCTREDSAEPVIIIPRTRPRFQVPAESAASVSASDSGDNVCGGAEEVAIRIIGAGEQESGSSPSSSRSRAGEPGCEEAAVVGRSGMLSSEARRRMAEERVPLVSLDDGIGGGRDSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQEFEDVGEASLSWFSRDVLGGIMVGQRNAACCFEGRKLERRIVVCFIELIGSTVLSGSFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFMLHVICIYWWYRNDDLLYPLAMLPPKTSPPFWHTIFIILVNDTLVRQAAMALKCLLLIYYKNGRGHNFRRQGQMLTLIEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVSAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01238 517 ProSitePatterns Zinc finger RING-type signature. 471 480 IPR017907 -
Vian4g01238 517 MobiDBLite consensus disorder prediction 1 21 - -
Vian4g01238 517 MobiDBLite consensus disorder prediction 98 121 - -
Vian4g01238 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 504 IPR013083 -
Vian4g01238 517 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 71 517 IPR044235 GO:0061630|GO:1904294
Vian4g01238 517 SMART ring_2 456 493 IPR001841 -
Vian4g01238 517 ProSiteProfiles Zinc finger RING-type profile. 456 494 IPR001841 -
Vian4g01238 517 SUPERFAMILY RING/U-box 446 499 - -
Vian4g01238 517 Pfam Zinc finger, C3HC4 type (RING finger) 454 497 - -
Vian4g01238 517 CDD RING-HC_RNFT1-like 454 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01238 Vian-Chr4 24701207 24708229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01238 61 517 C3H Transcription Factor Family AT5G01960 57.987 3.10e-180 511