Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01237 ATGGGGAGGAGGCCTGCAAGGTGTTATCGGCAGATAAAGAACAAACCATACCCCAAATCACGCTTCTGTCGTGGTGTTCCTGATCCTAAAATCAGAATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAATTTCCTTTCTGCGTCCATTTGGTCAGCTGGGAAAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGGCAAAGTTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCGTTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTCGGAAAGCCACTGGGTACATGTGCTAGAGTGGCCATTGGCCAGGTCCTTCTTTCAGTCCGCTGTAAGGACAGTAACAGTCATCATGCACAGGAGGCCCTTCGTCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGTTCTGATTATCTCAAGTACAAGTCAGAGAACAGGATTGTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCACTGGCAAATCGTCAACCTGGAAGAGCTTTTCTGACGAGTGCTACTGCCTAA 666 0.4595 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSDYLKYKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLTSATA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01237 221 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vian4g01237 221 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vian4g01237 221 FunFam 60S ribosomal protein L10 1 206 - -
Vian4g01237 221 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vian4g01237 221 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Vian4g01237 221 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vian4g01237 221 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vian4g01237 221 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vian4g01237 221 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01237 Vian-Chr4 24657837 24660062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01237 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.273 2.62e-146 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01237 K02866 - atri:130810566 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02019 7 32862365 32863878 Vian4g01237 4 24657837 24660062 PCT