Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01235 ATGAAGTTGCAGTTTTCTATTGTTGCAATTATTCTATTAGGCTCCACACTGTCTTTCTGTGGCATGATTGTAGCTGACTTGAAGTCTGACAAGCAAGCTCTGTTGGAGTTTTCTTCAAGTGTCCTACATGCCCCAAGACTCAACTGGAAGAATGACTCCGCTTCAATTTGCATCTCATGGGTTGGTGTGACATGCAACTCAAATGGCACACGTGTCATAGGCCTTCACCTTCCAGGAATGGGATTAACTGGGACCATTCAAGAGAGCAGCATAGGAAAACTAGATGCTCTTAGGGTCCTCAGTCTTCATTCCAATGGTCTCAGAGGAAATCTTCCTTCTAACATCCTCTCTATTCCTTCACTCCAATTTGTATACCTTCAGCACAATAACTTCTCTGGTGCAATTCCTTCTCCTGTGTCCCCTAAACTCTTTGCATTGGATATCTCCTGTAACTCCTTTTCTGGCAGCATCCCACCTGCAATTCAGAACCTGAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCCATATCTGGGGCTATTCCTGACTTCAACCTTCCAAGTCTCAAACATTTGAACTTGAGTTATAATAACTTCAATGGCTCAATTCCAAATTCCATAAAGACATTCCCTTATTCTTCTTTTGTCGGGAACTCTCTCTTATGTGGGCCACCACTAAATGATTGCTCTACAATCTCCCCTTCTCCATCTGCTTCCACTGATGATTACCCGCCACTCACCCCACCTACCATCCAAAACCAAAAGGGTACCAACCATAAGAAAAGCTTTGGCCTGGCTCCTATACTTGCTCTAGTCATTGGGGTCTTTGCCTTCCTCTCTCTGCTAGTTGTAGTGATCTGTGTCTTCTGTTTGAAGAGGAAGAAGAACAGTAAAAGCAGTGGCATACTGAAAGGAAAGGCTTCGTGTACTGGAAAGACAGAGGTTTCCAAGAGTTTCGGAAGTGGGGTGCAAGGGGCTGAAAAAAACAAACTATTTTTCTTTGAAGGTTCCTCTTCAAGCTTTGACCTTGAGGATTTGCTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGCTATGGAACAGCATATAAGGCTGTTTTGGAGGAGGGAACAACGGTGGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAAGGAGTTTGAGCAGCATTTGGAGATTGTAGGGAAATTTGGAAGCCACCCAAATGTGATGCCCCTAAGGGCTTATTACTATTCCAAAGATGAAAAACTTCTGGTTTACAACTACATGCCAGGTGGCAGCTTGTTTTTCTTGTTGCACGGAAACAGAGGTGCAGGAAGAACCCCACTTGACTGGGATTCCCGAGTGAAGATTTTGCATGGAGCTGCCAAGGGAATTGCTTTCATCCACTCCGAGGGAGGTCCAAAATTCACACATGGCAACATCAAGTCAAACAATGTGCTGATAACCCAAGAACTAGAAGGCTGCATCAGTGATGTTGGGTTGCCACCTCTAATGAACACCCCAGCAACCATGTCTAGAGGCAATGGCTATAGAGCTCCAGAAGTCACGGACTCAAAGAAGATCACTCAGAAGTCTGATGTATACAGCTTTGGTGTGGTGCTGCTTGAAATGCTGACAGGGAAGACCCCACTGAGGTATCCAGGGTATGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTAGGGAGGAATGGACTGCAGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAGTACGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCATTGGCATGTGTAGCTAAGGGCTCAGAAAATAGGCCTAGAATGGATGAAGTTGCTAGAATGATTGAGGAAATAAAGCATCCGGAGTTGAAGAACCGGCCATCTTCTGAGTCTGAATCTAATGTGCAAACACCATGA 1920 0.4479 MKLQFSIVAIILLGSTLSFCGMIVADLKSDKQALLEFSSSVLHAPRLNWKNDSASICISWVGVTCNSNGTRVIGLHLPGMGLTGTIQESSIGKLDALRVLSLHSNGLRGNLPSNILSIPSLQFVYLQHNNFSGAIPSPVSPKLFALDISCNSFSGSIPPAIQNLRRLTWLYLQNNSISGAIPDFNLPSLKHLNLSYNNFNGSIPNSIKTFPYSSFVGNSLLCGPPLNDCSTISPSPSASTDDYPPLTPPTIQNQKGTNHKKSFGLAPILALVIGVFAFLSLLVVVICVFCLKRKKNSKSSGILKGKASCTGKTEVSKSFGSGVQGAEKNKLFFFEGSSSSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQHLEIVGKFGSHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRTPLDWDSRVKILHGAAKGIAFIHSEGGPKFTHGNIKSNNVLITQELEGCISDVGLPPLMNTPATMSRGNGYRAPEVTDSKKITQKSDVYSFGVVLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGSENRPRMDEVARMIEEIKHPELKNRPSSESESNVQTP 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01235 639 Pfam Leucine Rich repeats (2 copies) 166 204 IPR025875 -
Vian4g01235 639 Gene3D Transferase(Phosphotransferase) domain 1 424 637 - -
Vian4g01235 639 FunFam pollen receptor-like kinase 1 316 423 - -
Vian4g01235 639 FunFam Leucine-rich repeat receptor-like protein kinase 143 229 - -
Vian4g01235 639 PANTHER OS05G0588300 PROTEIN 15 631 - -
Vian4g01235 639 FunFam Leucine-rich repeat receptor-like kinase 30 142 - -
Vian4g01235 639 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01235 639 CDD STKc_IRAK 354 619 - -
Vian4g01235 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 424 630 - -
Vian4g01235 639 MobiDBLite consensus disorder prediction 619 639 - -
Vian4g01235 639 SUPERFAMILY L domain-like 47 227 - -
Vian4g01235 639 ProSitePatterns Protein kinases ATP-binding region signature. 354 385 IPR017441 GO:0005524
Vian4g01235 639 Gene3D Ribonuclease Inhibitor 90 234 IPR032675 -
Vian4g01235 639 Gene3D Ribonuclease Inhibitor 23 89 IPR032675 -
Vian4g01235 639 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Vian4g01235 639 Gene3D Phosphorylase Kinase; domain 1 314 423 - -
Vian4g01235 639 Pfam Protein kinase domain 352 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01235 639 SUPERFAMILY Protein kinase-like (PK-like) 352 619 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01235 Vian-Chr4 24633947 24636275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01235 5 637 Receptor kinase-like Gene Family AT5G58300 58.372 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian4g01235 Pkinase 8.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01235 - - gmx:100818444 1130.55