Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01225 ATGGAAGAGGTAATTAACTCCATTCGACGCGCTTCTGAATTGGTTCAAAACCTTCAACAAGACCTACCCAACTTGGCCAACCAACCAGAGACGCTGTCCCTGTCCATTGATCAGATAACTCAGGCTTTCACTGCTGCCAAGGAACAGCTGTTGCTCATTTCCCGACACACCCAAACGTCGGAATCTCCTCCAATGTTGCTTCATGAAACCACACCCCACCAGCCTCAGATGGATGCTACTCTAATACAGGAGTGGTTAAGGTCTAGTCATACAGTAACCATGGATCAGTTGTTTCAAATGCAACTTGCTTCAATGGCAGCGAGAGAGGTGGAAGATTCAGAGAGAACCATGGGATCTGAAGGAGATCAAGGGCAGGGAATCCACGCATCTTCTTCACGACCACGGAGAAGGGAAGCAAATCAAGAGAAGAAGAAAATTCTGGTTCCTGCCCCACAGTTTGGAAACACAGAGATGCCACCGGAGGACGGTTTCACTTGGAGGAAATATGGACAGAAAGAAATACTTGGATCCAAATACCCAAGGAGTTACTACAGATGCACACATCAGAAGTTATACGAATGCCAAGCCAAGAAGATGGTGCAAAGACTTGATCACAATGCTAACATATTTGAGGTAACATACAGAGGGAAACACACATGCCATATGTCCTCCACAGCACCATCGTCAGTTCCCCCACAACATCTTTTGCTCGACATCACACAAAATACTAACACCATTTCCTCTCAATTGTCTCCGTCAGTCAATCTCAGCCTCCATCCCGCTAGTGGCGCCGCCGCCACCACTAGTGGCAGGGCCGGACCCTCCACCTCAAGATACGGTGCTGATTATCCCGTGGTAGATATGGCTGATGCTATGTTCAACTCTGGTAGCAGCAGCGGCAACAACAGCATGGAATTTATCTTCTCTCCCACGGAAGATAAAAGTGATGCAAATTGA 957 0.4754 MEEVINSIRRASELVQNLQQDLPNLANQPETLSLSIDQITQAFTAAKEQLLLISRHTQTSESPPMLLHETTPHQPQMDATLIQEWLRSSHTVTMDQLFQMQLASMAAREVEDSERTMGSEGDQGQGIHASSSRPRRREANQEKKKILVPAPQFGNTEMPPEDGFTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKMVQRLDHNANIFEVTYRGKHTCHMSSTAPSSVPPQHLLLDITQNTNTISSQLSPSVNLSLHPASGAAATTSGRAGPSTSRYGADYPVVDMADAMFNSGSSSGNNSMEFIFSPTEDKSDAN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01225 318 Pfam WRKY DNA -binding domain 161 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01225 318 MobiDBLite consensus disorder prediction 109 145 - -
Vian4g01225 318 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 43 241 IPR044810 GO:0003700
Vian4g01225 318 SMART WRKY_cls 160 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01225 318 Coils Coil 1 28 - -
Vian4g01225 318 SUPERFAMILY WRKY DNA-binding domain 157 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g01225 318 Gene3D WRKY domain 150 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g01225 318 ProSiteProfiles WRKY domain profile. 161 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01225 Vian-Chr4 24331007 24333845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01225 1 315 WRKY Transcription Factor Family AT2G40740 38.769 4.21e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian4g01225 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01225 - - pvu:PHAVU_009G043200g 525.013