Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01224 ATGGCTGCACCTTCTTCTTCAAATTGGGTCATGGAAACTGCTCACGATGTTCCTCATGTTTTGGCCGTCGACGACAACCTTATTGATCGAAAACTCGTTGAGAAACTCCTCAGGAATTCCTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTATTGGGCTTGACAAGTGGTGGACAGAACAGCATGAACGGTAGATCCAAAGTAAATTTGGTAATCACAGACTATTGCATGCCAGGAATGACAGGCTATGAGCTACTTAAGAAAATTAAGGAATCATCTGTAATGAAGGAGGTTCCTGTAGTGATAATGTCTTCTGAGAACATACCGACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATCTTAAAGCCCCTCAAACAATCTGATGTAAAGAAACTGACATGTCATGCTTGCCATGGTGATGGTGGTGGCGATGTCTGTGTTCGTCCAAACCCAAGCACTGCACAACAGGGTAACATGAGACAAACACGCACCTCCCAATACCTCGGAACATGCATGATGCCGCACGACAGGGGCAGCGACAACATGTCACTATCTTGTTAG 588 0.4524 MAAPSSSNWVMETAHDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNSMNGRSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVKKLTCHACHGDGGGDVCVRPNPSTAQQGNMRQTRTSQYLGTCMMPHDRGSDNMSLSC 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01224 195 Gene3D - 19 177 - -
Vian4g01224 195 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 147 IPR045279 GO:0009736
Vian4g01224 195 CDD REC_typeA_ARR 20 141 - -
Vian4g01224 195 ProSiteProfiles Response regulatory domain profile. 19 146 IPR001789 GO:0000160
Vian4g01224 195 SMART REC_2 18 142 IPR001789 GO:0000160
Vian4g01224 195 Pfam Response regulator receiver domain 20 140 IPR001789 GO:0000160
Vian4g01224 195 SUPERFAMILY CheY-like 18 146 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01224 Vian-Chr4 24230640 24232583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01224 5 144 Response Regulator Gene Family AT3G56380 69.718 1.49e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian4g01224 Response_reg 4.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01224 K14492 - gmx:100499827 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02095 7 36854796 36855581 Vian4g01224 4 24230640 24232583 PCT