Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01219 ATGAGGAATAACGTTGCGATCAGTGTCGTGGCTCCACCACTGGTAACCACCGTCGTGGAGGTTCAAGACCAAAAGGGTCGCATTCATACCATTGATTCCTCTACCGTCAAGACCTTCCTTGAAATTAACCCCTCTCTCTTTCGCCACCTTTATGCTTTCGCCTTTATCTCCACCCAAACAGTACCACACACTCACCTTCCACTCCTCACTTTCCAAACCATGGATCCGGACGCATTCACAGCCAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCCGCCGCACCGCCCTCCCGGCCCCCGCCGCCGCTCCTAGACTATGCTGTCGCCCCTCCCTCAGTCGCCCCGTCTTACCACCCCGCGAGGGCGGTGCCCCGCGAGCTCGGAGGCCTCGAGGAGCTTTTCCAGGCCTACGGCATCCGCTACTACACGGCTGCCAAGATCGCCGAGCTCGGGTTCACGGTGAGCACGCTGGTGGACATGAAAGACGAGGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGATCTCCTCGTCGGTGAACGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGACGTCGCATCGACGACGAGGACATCAAACGCCGCACTGGCAACCTCCTCTCCACCGACACCACCACCACCACCACCAACGCCCTCGATGCCCTCTCTCAAGAAGGAATGATGAAGAAGGGCATTGAGATTGATATTATTGTAGGTTTGTCGGAGGAGCCAGTGGTGCAACGAGAGAAGGAGGCGGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTGGTTGCGTTGGAGGAGAGGAGGAAGCAGCAGAGGAGGCGGAGAACGAAGATGAAGGAGCAGGAGGAGAAGGAGGAGGTAGAGGATGAGGAGGGAGAAGAGAACGAGGAGGGTAACAACAACAGTGGTGGAGGTTGTGAGAGGCAGAGGGAGCACCCGTTCATCGTGACGGAGCCTGGGGAGGTTGCACGTGGGAAGAAGAATGGGTTGGACTATCTGTTTCACCTCTACGAGCAGTGCCGCGAGTTCTTGATGCAGGTCCAGGCCATCGCGAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAAGCTGGAGCGAGCTACATCAACAAGCCAAAGATGCGACACTACGTCCACTGCTATGCCTTGCACTGTCTGGACGAGGAGGTGTCGAACGAGCTTCGTAGGGCGTTCAAGGAGAGAGGAGAGAACGTTGGAGCGTGGAGACAAGCATGTTACAAGCCCCTTGTGGCCATCGCAGCGCGTCAAGGTTGGGATATTGATGCCATATTCAACGCCCACCCTCGTCTTTCCATTTGTGCTCACCTTCCCTTCTAG 1389 0.5745 MRNNVAISVVAPPLVTTVVEVQDQKGRIHTIDSSTVKTFLEINPSLFRHLYAFAFISTQTVPHTHLPLLTFQTMDPDAFTASLFKWDPRTVLPAAPPSRPPPPLLDYAVAPPSVAPSYHPARAVPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIDDEDIKRRTGNLLSTDTTTTTTNALDALSQEGMMKKGIEIDIIVGLSEEPVVQREKEAVGSGGGSTWEVVALEERRKQQRRRRTKMKEQEEKEEVEDEEGEENEEGNNNSGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSICAHLPF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01219 462 Coils Coil 269 305 - -
Vian4g01219 462 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 310 457 IPR035209 GO:0003677
Vian4g01219 462 Gene3D Protein LEAFY 305 461 IPR038276 -
Vian4g01219 462 PANTHER PROTEIN LEAFY 74 456 IPR002910 GO:0003677|GO:0006355
Vian4g01219 462 MobiDBLite consensus disorder prediction 274 317 - -
Vian4g01219 462 Pfam Floricaula / Leafy protein SAM domain 127 203 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01219 Vian-Chr4 23443324 23447100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01219 74 456 Orphan Transcription Factor Family AT5G61850 63.797 6.30e-151 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Vian4g01219 C_LFY_FLO 4.5e-96 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01219 - - gsj:114416001 572.778