LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01206	ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTTCGAAGGACTAAAGGATCGATAGGCCACGCTTTCAAGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTACCTTATCTTTTAACAGATGTGCCGCCCCAGCTAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGACCGACCGAAGCCGACCTTGGGACCAAAAAGAGGGGCAGCGCCCCGCCTCCGATTCACGGAATAATATCACCCACTTCCTATCTGTTCCTAGCTTTCATGGGATGCGTTTGTGGCAAGTTTTCTCCCCCTTCCGAGACTCAGCGCCGGAATCAGCCAGTTAAGAGAGTTTTGAGCCGCAAGGGTTCCAGGCCACGCTCCTCTAATGTGGGAGAGAGGGTGAAAAGGGACACTCAGAGACAGAGAGTGCGTGTGAGTGTGAATAAGGATTCAGCTGGAGATGCTGTACGAGGAGGAGGAGGAGGAGAAAATGAAAAACCAGTTCCTAAAGAAGAGAAGAACAAGGTACGAGAGGATGCTGCTAAAGAAAGTAAGAGTAGTAAAGATTTGGATTCTAATGAGTCCAAGAACGAATTTGTGGATGGGTGGCCAAAGTGGTTACTGGATAACATCCCCACCAATGTTCTGGCTAAGCTTGTTCCCAAGAGCGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACGTATAGCAATGTGTACAAAGCAAGAGAGAAGGGCACTGGAAAGATTGTTGCTTTGAAGAAGGTACGGTTTGACACATCGGATTCTGAAAGCATAAAGTTTATGGCAAGAGAGATCATGATGCTGCAGAAGCTTGATCATCCCAATGTCATCAAGCTTAAAGGACTAGCTACTTCCAGAATGCAGTATAGTCTTTATCTGGTTTTTGACTTCATGCAGTCTGATCTCACTCGAATTATCTCCCGACCCGGGGAGACACTCACCGAACCGCAGATCAAGTGCTATATGCAGCAGCTACTTTGTGGTCTCCAGCACTGTCACGAGAGGGGAATTATGCACCGAGATATTAAGGCTTCTAACTTATTAATAGACAGAAAAGGGGTTCTGAAAATTGCGGATTTTGGGCTTGCAACTTCCATTGAATCTGGAAAACCTCTAACAAATAGAGTGGTAACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTCTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAGATTCAGATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTATTTCAAAAAACTGAAGCTAACAACAAGCTTCCGGCCTCCACAGCATTACAAACCTACCTACCAAGAGAACTTCAACAAGTTTCCTTCCTCTTCCCACTCCCTCTTGGCCAGACTTCTTGATCTCAACCCCACAAATCGTTCAACTGCTGCCTCTGCCCTTCAAACTGAATTCTTCCGATGTAGTCCATTAGCATGTGACCCTTCAGCTTTACCAGTAATCATCAAAGACGAGGATGAACGCTTACAAACTAAGAGAAGCAAAAGGCACAGAGTTTCTAAAAGAGGCCAACCATCTCAAACAAGTAAAAGTGAAGCTAAATCAAGAAAAACCCAAAGTCCAGAACAACCTCGTCAAGACACACAATCAACAAAACAGAAGAATGTGGAACAGCAGAAGCAGAGTCAAGAAACTGGGCATAGTGCTAGCAGCACATCATCCGGGTCAAGACTATTCACGAATGAAGGGAGCACAAATACATCTTTATCACCAACTTTTCTCTCTAGTGGCAGTGTGAGAAAATCTCCCAAAACAGAGGGTAGCCCAAATGCTCTTAAGAACATAAATCACTATAATGCACTCTTACAGGCTTCTATGATTGATATCATCAACCGAAATGAAGGCACCGAAGTTCCTCAGCTTCCAAAATCCTTCTCTCACTTGGATTATCGACTTGGTCCAGACAATATCAAACCTCTATACTTCATCTAA	2187	0.4481	MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRTKGSIGHAFKVRIRTGNQNQTSFYPFVPHEISVLVELILGHLPYLLTDVPPQLNSPPDNVFRPDRPTEADLGTKKRGSAPPPIHGIISPTSYLFLAFMGCVCGKFSPPSETQRRNQPVKRVLSRKGSRPRSSNVGERVKRDTQRQRVRVSVNKDSAGDAVRGGGGGENEKPVPKEEKNKVREDAAKESKSSKDLDSNESKNEFVDGWPKWLLDNIPTNVLAKLVPKSADSYEKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTSDSESIKFMAREIMMLQKLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGETLTEPQIKCYMQQLLCGLQHCHERGIMHRDIKASNLLIDRKGVLKIADFGLATSIESGKPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIQMIFKLCGSPSEDYFKKLKLTTSFRPPQHYKPTYQENFNKFPSSSHSLLARLLDLNPTNRSTAASALQTEFFRCSPLACDPSALPVIIKDEDERLQTKRSKRHRVSKRGQPSQTSKSEAKSRKTQSPEQPRQDTQSTKQKNVEQQKQSQETGHSASSTSSGSRLFTNEGSTNTSLSPTFLSSGSVRKSPKTEGSPNALKNINHYNALLQASMIDIINRNEGTEVPQLPKSFSHLDYRLGPDNIKPLYFI	728

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g01206	728	MobiDBLite	consensus disorder prediction	573	676	-	-
	Vian4g01206	728	ProSitePatterns	Protein kinases ATP-binding region signature.	277	300	IPR017441	GO:0005524
	Vian4g01206	728	MobiDBLite	consensus disorder prediction	94	123	-	-
	Vian4g01206	728	CDD	STKc_CDK9_like	271	551	-	-
	Vian4g01206	728	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	391	403	IPR008271	GO:0004672\|GO:0006468
	Vian4g01206	728	MobiDBLite	consensus disorder prediction	146	240	-	-
	Vian4g01206	728	SMART	serkin_6	271	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g01206	728	SUPERFAMILY	Protein kinase-like (PK-like)	266	554	IPR011009	-
	Vian4g01206	728	Gene3D	Transferase(Phosphotransferase) domain 1	354	635	-	-
	Vian4g01206	728	ProSiteProfiles	Protein kinase domain profile.	271	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g01206	728	MobiDBLite	consensus disorder prediction	607	676	-	-
	Vian4g01206	728	MobiDBLite	consensus disorder prediction	170	188	-	-
	Vian4g01206	728	FunFam	Putative serine/threonine-protein kinase	354	589	-	-
	Vian4g01206	728	Pfam	Protein kinase domain	271	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g01206	728	FunFam	probable serine/threonine-protein kinase At1g54610	258	353	-	-
	Vian4g01206	728	Gene3D	Phosphorylase Kinase; domain 1	259	353	-	-
	Vian4g01206	728	PANTHER	CELL DIVISION PROTEIN KINASE	269	556	-	-
	Vian4g01206	728	MobiDBLite	consensus disorder prediction	208	240	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g01206	Vian-Chr4	21698827	21716209	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g01206	266	684	Core Cell Cycle Gene Families	AT5G10270	41.136	1.49e-96	306

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vian4g01206		Pkinase	6.9e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g01206	K08819		-	gmx:100782603	833.558