Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01198 ATGGGCGCGCACTCTCTTCTTCTTCGTCTCACCCTCCATTTTCTTCTGCTTCGTCCCACGCTCTCTTTCTACTGTCCATTTCTTCTCGCCCTCCATTGTCGCTACTTCCATTGCTCTCTCGTTGGTGCTCCGCTTGACGAGTTCATGCCGTTGCAGACCGTTGTTGCTGCATTGCCCTCTTGGAACGACGCTTTCGCCTCCTTCGATCGAAACTCGGACTCATGCAGAGGCGAAACCCGATCGTTCCTGCGCGGAATCGACGTGAATCGGCTACCTTCGGCCATGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAACACCATTTCGAGCAAATGTAGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTACAGGGGAACTACCGCCCTGTTTAACTATGTCAATTGGGTGGAGAACAACTAA 438 0.5137 MGAHSLLLRLTLHFLLLRPTLSFYCPFLLALHCRYFHCSLVGAPLDEFMPLQTVVAALPSWNDAFASFDRNSDSCRGETRSFLRGIDVNRLPSAMDMEEEAGVSSPNNTISSKCRNTDIEGVDSTNACYRGTTALFNYVNWVENN 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01198 145 Gene3D - 102 145 IPR016039 GO:0016746
Vian4g01198 145 Pfam HD-ZIP protein N terminus 55 112 IPR006712 GO:0005634
Vian4g01198 145 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 116 131 IPR000590 GO:0004421|GO:0008299
Vian4g01198 145 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 112 145 IPR013528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01198 Vian-Chr4 21221100 21222153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01198 61 122 Homeobox Transcription Factor Family AT4G17460 48.485 5.30e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01198 K09338 K01726 gmx:100813367 99.3673