Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01193 ATGGAACAGTATTTTGGAAACCCTAATTTCTGTCACTCTGCCGTGGTCAACATGGCAGCATCTCCAGCCTCTGAGTTCAAGATATCTGATTATCTTATATTGGAAGATGTTGCTGATTATCATCATGAAGAGTGTTGGTCACTAAGCACTGAAACTGAATCATCGGAGAAAGCAAACTCTAGCGATGCCAGTCATGGATTTGGTGATGCAACCTCCACCACCACCACCACCAACAACAACAACAACATAAAGTGCAAAAATAAAGGGATTAAGCAAAAGAAGGCAGAAGTGAGTCAAAGCATCACGTTTAGAACCAGATCGCAGCTCGAGATCATGGATGATGGATATAAATGGAGGAAATACGGAAAGAAGACAGTGAAGAACAATTCCAACCCAAGGAACTACTACAAGTGTTCAGGTGCAGGATGCAGTGTGAAGAAAAGGGTGGAAAGAGACCGAAATGACTCAAACTATGTTCTAACAACGTACGTAGGTGTCCACAATCACCACACCCCGTCTTCCTATTACACCCAAATGCCTTTGTTGCATTCTGATGATTGGAACCTTCTCCCTTCTGCAACTCAAAACTCATAG 594 0.4276 MEQYFGNPNFCHSAVVNMAASPASEFKISDYLILEDVADYHHEECWSLSTETESSEKANSSDASHGFGDATSTTTTTNNNNNIKCKNKGIKQKKAEVSQSITFRTRSQLEIMDDGYKWRKYGKKTVKNNSNPRNYYKCSGAGCSVKKRVERDRNDSNYVLTTYVGVHNHHTPSSYYTQMPLLHSDDWNLLPSATQNS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01193 197 SMART WRKY_cls 112 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01193 197 Gene3D WRKY domain 96 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g01193 197 FunFam WRKY transcription factor 57 98 172 - -
Vian4g01193 197 Pfam WRKY DNA -binding domain 113 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01193 197 SUPERFAMILY WRKY DNA-binding domain 104 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g01193 197 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 49 174 IPR044810 GO:0003700
Vian4g01193 197 ProSiteProfiles WRKY domain profile. 107 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01193 197 MobiDBLite consensus disorder prediction 51 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01193 Vian-Chr4 20794943 20796778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01193 4 188 WRKY Transcription Factor Family AT5G64810 43.005 1.06e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian4g01193 WRKY 9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01193 - - gmx:100127396 274.633