Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01191 ATGGACTTGGCCGCGAAGCTTCACCTCTTAGACCTCACCGGCGCGGTCATCTTGGATGCACGAAAGCCCACCGTGCTACGCCACCTTCCGCCACGCGTCACCACCAGAGCGAACACCAACAACACTAACATCAGCACCAATCTAATTTACACCAACCGCTTCTCGAGCCCATTGCGGCCCAATTCCGCTTCCTCTTCGGGCCTGACAACTGTAACAGTCGACGAAGATATCGAGTCTCTCTTCTCCGAAACCTCCTCGGAGGAGCCGCGGCGCAGAGGGAAGCAGCAGAGTAGCGGCGCGTCGGGCGTGTCGTCGGGGGTGAAGTTTGAAAACGTGGGGAAGGCGTACAAGGGCGTGACAGTGTTGAAGGACGTGAGTTGGGAGGTGAAGAAGGGGGAGAAGGTGGGTTTGGTTGGCGTGAACGGAGCGGGCAAGACGACGCAGATGAGGATTATCGCGGGATTGGAGGAGCCGGATTATGGGAACGTCATAAAGGCTAAGCCGAACATGAAAATCGCGTTTCTGAATCAGGAGTTCGAGGTGTCGCTGAGCAGGACAGTGAGGGAGGAGTTCATGAGCGCGTTCAAGGAGGAAATGGAGGTGGCGGGGAAATTGGAGAGGGTCCAGAAGGCGCTCGAGGGTGCTGTCAACGATTTGGACTTGATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGCGGAGGGCTCAGTCTGTGGACCTCGATGAGGTTGACGCGAAAATAAATAAGTTGGTGCCTGAACTTGGCTTTTCTCCCGAGGATTCTGATAGGTTGGTTGCGTCTTTCAGTGGAGGCTGGCAGATGAGAATGTGTCTTGGAAAGATTCTACTCCAGGAGCCTGATTTATTGCTGTTAGATGAGCCCACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAGGAGTATCTTAACCAGCAGGATGTGCCAATGGTTATCATTTCCCATGACCGAGCTTTCCTTGATCAACTGTGTACAAAAATTGTGGAAACTGACATGGGTGTGTCAAGGACGTTTGAGGGAAATTATTCGCAGTATGTAATTTCAAAAGCAGCATGGATTGAAGCACAGTATGCTGCTTGGGAGAAGCAGCAGAAAGAAATTGAGCATACAAGAGACTTGATAGGTAGATTAAGTGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGGGAAGAAGCTGGAGAGACTCCAGGAAGAGGAACTGGTGGAGAAGCCATTTGAACGCAAACAGATGAAAATCAGGTTCCCTGAGCGCGGAAAGAGTGGAAGATCTGTTGTAACAATTAGGAACTTGGAATTTGGCTTTGAGGATAAGCCACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCGATTATTGGTCCAAATGGTTGTGGCAAGAGTTCTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAAGTTTTGCTTGGGGAGCATAATGTGTTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCGCTTGATCTAGACAAGACAGTGCTTGAGACAGTAGAGGAAGCAGCAGAGGACTGGAGGATTGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAGTTCATGGTTAAACCATCAACTCTGCTTGTGTTGGATGAACCCACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAGTGAATACGAGGGCACCGTTATCACAGTATCTCATGACAGATACTTCATAAAGCAAATAGTTAACAGGGTCATAGAAATTAAAGATGGCACTATACAGGATTATGCAGGTGATTACGATTATTATTTAGAGAAGAATCTCGATGCTATGGAAAGAGAACTTGAACGTGAGGCAGAGCTTGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCCAAGATGTCGAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAAATGCAGGCGTTTCAGGCCGCAAAACAGAAGTCTAAAGGTGTGAAAAATTCGAAGAGATGGAATTGA 2106 0.4734 MDLAAKLHLLDLTGAVILDARKPTVLRHLPPRVTTRANTNNTNISTNLIYTNRFSSPLRPNSASSSGLTTVTVDEDIESLFSETSSEEPRRRGKQQSSGASGVSSGVKFENVGKAYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDYGNVIKAKPNMKIAFLNQEFEVSLSRTVREEFMSAFKEEMEVAGKLERVQKALEGAVNDLDLMGRLLDEFDLLQRRAQSVDLDEVDAKINKLVPELGFSPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEHTRDLIGRLSAGANSGRASSAGKKLERLQEEELVEKPFERKQMKIRFPERGKSGRSVVTIRNLEFGFEDKPLFKKANLTIERGEKIAIIGPNGCGKSSLLKLIMGLEKPTGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYEGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYDYYLEKNLDAMERELEREAELDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNSKRWN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01191 701 MobiDBLite consensus disorder prediction 651 701 - -
Vian4g01191 701 SMART AAA_5 131 346 IPR003593 GO:0016887
Vian4g01191 701 SMART AAA_5 458 626 IPR003593 GO:0016887
Vian4g01191 701 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524|GO:0016887
Vian4g01191 701 CDD ABCF_EF-3 434 626 - -
Vian4g01191 701 CDD ABCF_EF-3 108 337 - -
Vian4g01191 701 FunFam ABC transporter ATP-binding protein 394 665 - -
Vian4g01191 701 Gene3D - 397 664 IPR027417 -
Vian4g01191 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 354 IPR027417 -
Vian4g01191 701 Pfam ABC transporter 336 423 IPR032781 -
Vian4g01191 701 Coils Coil 661 690 - -
Vian4g01191 701 ProSitePatterns ABC transporters family signature. 269 283 IPR017871 GO:0005524|GO:0016887
Vian4g01191 701 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 106 692 - -
Vian4g01191 701 MobiDBLite consensus disorder prediction 81 105 - -
Vian4g01191 701 FunFam Putative ABC transporter ATP-binding component 107 392 - -
Vian4g01191 701 Pfam ABC transporter 450 581 IPR003439 GO:0005524
Vian4g01191 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 641 IPR027417 -
Vian4g01191 701 Gene3D - 104 389 IPR027417 -
Vian4g01191 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 434 649 IPR003439 GO:0005524
Vian4g01191 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 107 365 IPR003439 GO:0005524
Vian4g01191 701 Pfam ABC transporter 122 297 IPR003439 GO:0005524
Vian4g01191 701 MobiDBLite consensus disorder prediction 651 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01191 Vian-Chr4 20739003 20743982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01191 433 654 Calmodulin-binding Proteins AT2G36910 25.403 2.41e-12 68.6