Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01178 ATGAATTCCCCACCCAACCTCTTCGTCTCTTTTCTTCTTCTTCTTCTTCTCTTCTTCACTGTCTTCTCCGTTTCTTCCTCCGCCTCACTCCCCGAGCTTCGATCTCTCATGGAATTCAAGAAGGGGATAACTCAAGATCCCCACAATCTTCTCGACTCCTGGGCTCCGGCCGCGGTCGCCGAGTCCACCGCCGCCTGTCCTTCTACTTGGCAGGGCATTCTTTGCGACGAGGAGTCCGGCAACGTCACCGGAATCGTCCTCGACCGCCTCCACCTCGGCGGGGAGCTCAAGTTCCACACTCTCCTCGACCTCAAGATGCTCAGAAACCTCTCCCTCTCCGGCAACGATTTCACTGGAAGGTTGCCTCCTTCCCTGGGCTCGCTCTCCTCGCTCCAGCATTTGGATCTTTCTCAGAACAAGTTCTACGGCCCCATCCCCGCTCGGATCAACGACCTTTGGGGTCTTAATTACCTCAATTTGTCCAACAACCAGTTCAAGGGCGGCTTCCCCAGTGGCCTCTCCAACCTTCAGCAGCTCCGAGTTCTCGATTTGCATGCCAACGCTCTCTGGGCGGAAATTGGGGACGTCCTCTCTACGCTACGGAATGTGGAGCGCGTCGATTTGAGTCTTAACCAGTTCTTTGGCGGACTTTCCTTGACCGTGGAGAATATTTCTGGATTGGCCAACACGGTACATTTTCTTAACCTCAGTTACAACAACTTGAACGGTCACTTCTTTAAGAACTCCACCATTGGCCTGTTTCGCAACCTGCAAGTTTTGGACTTGAGTAATAATTCCATCACCGGGGAGCTTCCTTCTTTTGGCTCATTACCCGCACTTCGCGTTCTTAGGCTTCCCCGGAACCAACTGTTTGGCTCCGTGCCCGAGGAATTGTTGCAAACTTCAGTGCCACTGGTAGAATTGGATCTTAGCGTCAACGGGTTTACCGGCTCTATAGCTGCAATTAACTCTACAAGTTTAAGTATTTTGAATCTTTCATCCAATAGTTTGTCAGGATCGTTGCCAACTTCTTTGACAAGATGTACGGTCATTGACATTAGCAGAAATATGTTATCTGGTGACATTTCTGTTATACAGAACTGGGAAGCCCCACTGGAGGTTATTAATCTGAGTTCAAACAAGCTGTCAGGATCCTTGCCCCCTACTTTAGGAACCTATTCAAAATTGTTTAGAGTTGATTTAAGTTTAAATGAGCTCAAGGGATCCATTCCACGAGGTTTAGTTACTTCATCATCAGTGACAAGACTGAATCTTTCTGGGAATCAACTCACAGGGCAACTTCTGCTTCAAGGTTCAGGAGCCAGTGAGTTACTCCTTATGCCTCCTTATCAACCAATGGAATATCTTGATGTATCTAATAACTCCTTAGAAGGTGCCTTGCCTTCTGAAATAGATAGGATGAGTGTCCTCAAACTGCTGAATGTGGCTAGGAATGAGTTTTCCGGACCTCTGCCAAGTGAATTGAACAAACTTCTTTATTTGGAGTACCTTGATTTGTCTAACAACAAATTTTCTGGAAATATTCCTGATAAGCTTTCATCCAACTTAACTGTATTTAACGTGTCCAATAATGATCTATCTGGTCGAGTTCCAGAAAATTTGCGGCAGTTCTCTCCTTCATCCTTTCGCCCTGGAAATGGAAAGTTAATGTTACCAAAAGATTCTCCTGAGACTTCTTCGGTGCCTGATAACATTCCAGATAAGGGTAGACGTCATAGTTCAAAGGGTAATATCAGGATAGCAATTATTCTTGCCTCTGTAGGTGCTGCTATTATGATTGCTTTTGTTTTATTGGCATATCATCGAACACAACTAAAAGAATTTCATGGAAGAAGTGAGTTCACTGGTCAAAATACTAGAAGAGATGTCAAGTTAGGAGGACTTTCAAGGCCTTCCCTCTTCAAGTTCAATACAAATGTTCAACCCCCAACAACCTCATTGAGCTTTTCGAATGACCACCTCCTGACTTCCAATTCGAGGTCACTCTCTGGTGGACAGTCAGAGTTTATAACTGAAATTTCTGAGCATGGCTTAACGCAGGGAATGGTGGCTACTAGTTCAGCAGCTGTAAATCCTAATTTGATGGATAACCCTCCCACTTCATCTGGAAGGAAGTCTTCTCCTGGTTCCCCATTGTCATCCTCACCACGTTTCATAGAGGCTTGTGAAAAGCCAGTGATGTTGGATGTATACTCACCAGATCGGTTGGCTGGGGAATTGTTTTTCCTGGACTCTTCCCTGGCATTCACTGCAGAGGAATTATCTAGAGCACCAGCTGAAGTTCTTGGTAGAAGTAGCCATGGCACTTTATATAAAGCAACTTTGGACAGTGGTCATATGTTGACTGTAAAATGGTTACGGGTAGGATTGGTGAAACATAAAAAGGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCAAACATTGTCCCATTACGAGCATACTATTGGGGGCCTAGGGAACAAGAAAGGCTTCTTTTAGCTGACTATATACATGGGGACAATTTGGCCCTTCATCTCTATGGCTCCATGGCTATTTCTAGGTGTATTGTAGAGATTTCCATGGCTCCATGGCTATATTTTTGTCATGAGAGCACACCCAGAAGGTACTCCCCGTTATCATTCAGCCAGAGAATAAAAGTTGCTGTTGATGTTGCACGATGTCTTCTATACCTTCATGACCGAGGACTTCCCCATGGAAATCTGAAGCCCACGAATATAGTTTTGGCAGGCCCTGATTTCAGTGCTCGTCTTACTGACTATGGTCTTCACCGGCTGATGACTCCGGCTGGAATTGCAGAGCAGATACTCAACCTTGGAGCACTTGGATACCGTGCTCCGGAACTTGCTGCTGCATCCAAACCGGTTCCTTCGTTTAAGGCCGATGTGTATGCTCTTGGTGTGATCCTAATGGAATTGTTGACAAGAAAAAGTGCAGGTGACATAATATCGGGGCAGTCAGGTGCTGTTGATCTTACAGATTGGGTTAGGCTGTGTGAGCGAGAAGGAAGGGTAATGGACTGTATCGACAGAGACATTGCAGGTGGGGAAGAATCCTCCAAAGAGATGGATGAACTGCTTGCAATATCTCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTAACATCAGACAAGTTTTTGACGATCTGTGTTCAATATCCGTTTGA 3198 0.4562 MNSPPNLFVSFLLLLLLFFTVFSVSSSASLPELRSLMEFKKGITQDPHNLLDSWAPAAVAESTAACPSTWQGILCDEESGNVTGIVLDRLHLGGELKFHTLLDLKMLRNLSLSGNDFTGRLPPSLGSLSSLQHLDLSQNKFYGPIPARINDLWGLNYLNLSNNQFKGGFPSGLSNLQQLRVLDLHANALWAEIGDVLSTLRNVERVDLSLNQFFGGLSLTVENISGLANTVHFLNLSYNNLNGHFFKNSTIGLFRNLQVLDLSNNSITGELPSFGSLPALRVLRLPRNQLFGSVPEELLQTSVPLVELDLSVNGFTGSIAAINSTSLSILNLSSNSLSGSLPTSLTRCTVIDISRNMLSGDISVIQNWEAPLEVINLSSNKLSGSLPPTLGTYSKLFRVDLSLNELKGSIPRGLVTSSSVTRLNLSGNQLTGQLLLQGSGASELLLMPPYQPMEYLDVSNNSLEGALPSEIDRMSVLKLLNVARNEFSGPLPSELNKLLYLEYLDLSNNKFSGNIPDKLSSNLTVFNVSNNDLSGRVPENLRQFSPSSFRPGNGKLMLPKDSPETSSVPDNIPDKGRRHSSKGNIRIAIILASVGAAIMIAFVLLAYHRTQLKEFHGRSEFTGQNTRRDVKLGGLSRPSLFKFNTNVQPPTTSLSFSNDHLLTSNSRSLSGGQSEFITEISEHGLTQGMVATSSAAVNPNLMDNPPTSSGRKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRAYYWGPREQERLLLADYIHGDNLALHLYGSMAISRCIVEISMAPWLYFCHESTPRRYSPLSFSQRIKVAVDVARCLLYLHDRGLPHGNLKPTNIVLAGPDFSARLTDYGLHRLMTPAGIAEQILNLGALGYRAPELAAASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDELLAISLRCILPVNERPNIRQVFDDLCSISV 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01178 1065 Pfam Leucine rich repeat N-terminal domain 32 76 IPR013210 -
Vian4g01178 1065 FunFam Nuclear pore complex protein NUP107 29 195 - -
Vian4g01178 1065 MobiDBLite consensus disorder prediction 542 579 - -
Vian4g01178 1065 MobiDBLite consensus disorder prediction 697 723 - -
Vian4g01178 1065 Gene3D Phosphorylase Kinase; domain 1 744 840 - -
Vian4g01178 1065 SUPERFAMILY Protein kinase-like (PK-like) 766 1060 IPR011009 -
Vian4g01178 1065 ProSiteProfiles Protein kinase domain profile. 763 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01178 1065 Pfam Protein kinase domain 767 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01178 1065 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Vian4g01178 1065 FunFam Leucine-rich repeat receptor protein kinase EMS1 447 540 - -
Vian4g01178 1065 MobiDBLite consensus disorder prediction 697 721 - -
Vian4g01178 1065 Gene3D Transferase(Phosphotransferase) domain 1 868 1065 - -
Vian4g01178 1065 FunFam Leucine-rich repeat receptor-like protein kinase 748 840 - -
Vian4g01178 1065 SUPERFAMILY L domain-like 66 363 - -
Vian4g01178 1065 Gene3D Ribonuclease Inhibitor 192 301 IPR032675 -
Vian4g01178 1065 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 230 444 - -
Vian4g01178 1065 FunFam Pollen receptor-like kinase 1 863 1065 - -
Vian4g01178 1065 SMART LRR_typ_2 498 522 IPR003591 -
Vian4g01178 1065 SMART LRR_typ_2 176 200 IPR003591 -
Vian4g01178 1065 SMART LRR_typ_2 254 276 IPR003591 -
Vian4g01178 1065 SMART LRR_typ_2 277 301 IPR003591 -
Vian4g01178 1065 SMART LRR_typ_2 128 152 IPR003591 -
Vian4g01178 1065 SMART LRR_typ_2 325 348 IPR003591 -
Vian4g01178 1065 ProSiteProfiles Leucine-rich repeat profile. 256 278 IPR001611 GO:0005515
Vian4g01178 1065 PANTHER OS07G0626500 PROTEIN 13 107 - -
Vian4g01178 1065 Gene3D Ribonuclease Inhibitor 302 566 IPR032675 -
Vian4g01178 1065 SUPERFAMILY RNI-like 324 543 - -
Vian4g01178 1065 Pfam Leucine Rich repeats (2 copies) 256 288 IPR025875 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01178 Vian-Chr4 20467429 20472331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01178 12 620 Receptor kinase-like Gene Family AT5G62230 33.549 1.17e-61 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian4g01178 Pkinase 2.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01178 - - gmx:100802768 1766.51