Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01177 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAAAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCTGGAACCCTAAATACCATCACCCCTTGTGCAGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCACCATATTTCTCTCCCCATGAGCCTCAAAAGTTTGCTTCAGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAGAGAGCCGATGCAGCAAATAGTCTAGTTTATGAAGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGGTTTGCAGCAACAAGTTCAATCTTTACAAGCTGAACTTAACGTAGTGAAGGCTGAAATACTTAAATACAAACTCAGGGAAGCTCACATGATACCCTCCTCTCATGTTGCAATGCTTCCTTCATCTGGGGTTGTTTCAATCGCTGCTCCACCTCCACCACCTCCTCCACCACCACCACTTCCACCTCCTTCTATTCCTCAAACTTCTTCCTCTTCTTCCATGTACATCCAACTCAGAGATCCCACCACTTACACCACAATTTCAAGTGATAATATCTCCTATTTTGGTTAA 657 0.4399 MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISGLQQQVQSLQAELNVVKAEILKYKLREAHMIPSSHVAMLPSSGVVSIAAPPPPPPPPPPLPPPSIPQTSSSSSMYIQLRDPTTYTTISSDNISYFG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01177 218 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vian4g01177 218 MobiDBLite consensus disorder prediction 169 188 - -
Vian4g01177 218 MobiDBLite consensus disorder prediction 169 198 - -
Vian4g01177 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 179 - -
Vian4g01177 218 Coils Coil 121 148 - -
Vian4g01177 218 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01177 Vian-Chr4 20434929 20435757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01177 27 169 AS2 family AT2G40470 82.993 1.03e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian4g01177 LOB 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01177 - - gmx:100786324 369.392