Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01170 ATGGGAATGGTTGGTAATAATTGGTTCCCTTCGGTGCTCAAAGTTCCTTTGGAAAGTGGGACTGAGGACAACCCCACCTTCACAGGCAAGAGGCTTCACAAGAACAAGGACAGGATGGAGGACTACAACGTCGCTATGAAGAGAATGATGAGGAACCCTTATGAGTATCACCATGATCTCGGTATGAATTATACTTTTATAACGGACTACTTGATTGTGGGCTCTCAACCACAGAAACCGGAAGACATAGATCACCTAAAAAAAGAAGAGGGTGTGACATACATTCTAAATTTGCAACAGGACAAGGATGTTGATTACTGGGGAATAGATTTACAGTCAATAATAAGAAGGTGTCACGAACTTGAAATTGGCCACATTAGGAGACCGGCAAAAGACTTTGATCCAGGGTCCTTGCGAAGTGAACTACCTAAAGCAGTTGCATCCTTAGAATGGGCAATTTCTCAGGGGAAAGGAAGAGTTTATGTACACTGTACTGCAGGGCTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTCGCATGAATCTAAATGAAGCTTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAACAGCAATACGTGGAGCTACTTATGATTTGTCTAAGAATGATCCATTCAAGGAGCCATTTGAGAATCTTCCAGAATATGCATTTGAGGATATAGCAGACTGGGAAAGAAACTTGATCCAAGATCGTGTTCGCTCCCTTCGTAATACTTGA 762 0.4213 MGMVGNNWFPSVLKVPLESGTEDNPTFTGKRLHKNKDRMEDYNVAMKRMMRNPYEYHHDLGMNYTFITDYLIVGSQPQKPEDIDHLKKEEGVTYILNLQQDKDVDYWGIDLQSIIRRCHELEIGHIRRPAKDFDPGSLRSELPKAVASLEWAISQGKGRVYVHCTAGLGRAPAVAIAYLFWFCRMNLNEAYDMLTSKRPCGPNKTAIRGATYDLSKNDPFKEPFENLPEYAFEDIADWERNLIQDRVRSLRNT 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01170 253 SMART dsp_5 63 205 IPR020422 GO:0006470|GO:0008138
Vian4g01170 253 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 28 219 - -
Vian4g01170 253 Pfam Dual specificity phosphatase, catalytic domain 84 203 IPR000340 GO:0008138|GO:0016311
Vian4g01170 253 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 140 199 IPR000387 GO:0016311|GO:0016791
Vian4g01170 253 CDD DSP_laforin-like 62 209 IPR045204 GO:0019203
Vian4g01170 253 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 46 253 - -
Vian4g01170 253 Gene3D Protein tyrosine phosphatase superfamily 46 253 IPR029021 -
Vian4g01170 253 ProSiteProfiles Dual specificity protein phosphatase domain profile. 63 220 IPR020422 GO:0006470|GO:0008138
Vian4g01170 253 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 60 205 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01170 Vian-Chr4 20247060 20249708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01170 23 253 Protein tyrosine phosphatase (PTP) family AT3G10940 77.489 3.45e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01170 - - gmx:100787079 433.721