Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01155 ATGGGTAGATCTCCTTGTTGTGAGAAGGAACACACAAACAAAGGAGCTTGGACCAAAGAGGAAGACGAACGCCTCATCAACTACATCAAACTCCATGGCGAAGGTTGTTGGAGATCCCTCCCCAAAGCTGCCGCGGTTTCGCCTCCCTCCACCGCCGCTGTCCCTGTGGCAACGTCATCGTCCAACAAAAAAATAAACAGCGACAGCATTAACAGCTCCAACACCCTCGCCCATGATGTTGTTATTACCAACAATAACATCAACAGTAACAACAGCAACGGTTTTCATTTGGTGAGCCATACTGGCTATGCCAACGCCATAACGAAGGTTGGAACCGACGAAGATTCTAACAGCAGCAGCGGCGTTACCGTGGAAGAATCCCTCCCTCACCATCAAATCAACTTGGACCTTTCCATTGGCCTTCCCTCTTCTCGGCAAGTTTCTTCTTCGGTGAACCCAGAAAAGTTGAAAGCGCAAGAGCATGATCAAAAACCGCATGTGTTGTACAATTGGTATGGGAACATTACTGGCCAAAGTGTTTGTCTTTGTTACAGTCTAGGGCTTCAAAGCGACCAAGCTTGTTATTGCAAAGGCATGGGTGCTACTGCTACTGCTACAACGGTTACTACAACTGCCACAGATAGTAATCTATATAGATTTTACAGACCCATGAATATTTAG 681 0.467 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAAVSPPSTAAVPVATSSSNKKINSDSINSSNTLAHDVVITNNNINSNNSNGFHLVSHTGYANAITKVGTDEDSNSSSGVTVEESLPHHQINLDLSIGLPSSRQVSSSVNPEKLKAQEHDQKPHVLYNWYGNITGQSVCLCYSLGLQSDQACYCKGMGATATATTVTTTATDSNLYRFYRPMNI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01155 226 Pfam Myb-like DNA-binding domain 14 41 IPR001005 -
Vian4g01155 226 Gene3D - 7 53 - -
Vian4g01155 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 39 IPR017930 -
Vian4g01155 226 ProSiteProfiles Myb-like domain profile. 9 42 IPR001005 -
Vian4g01155 226 SUPERFAMILY Homeodomain-like 9 43 IPR009057 -
Vian4g01155 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 45 - -
Vian4g01155 226 CDD SANT 16 42 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01155 Vian-Chr4 19783454 19784646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01155 1 46 MYB Transcription Factor Family AT2G16720 84.783 3.88e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian4g01155 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01155 K09422 - gmx:778033 194.512