LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01155	ATGGGTAGATCTCCTTGTTGTGAGAAGGAACACACAAACAAAGGAGCTTGGACCAAAGAGGAAGACGAACGCCTCATCAACTACATCAAACTCCATGGCGAAGGTTGTTGGAGATCCCTCCCCAAAGCTGCCGCGGTTTCGCCTCCCTCCACCGCCGCTGTCCCTGTGGCAACGTCATCGTCCAACAAAAAAATAAACAGCGACAGCATTAACAGCTCCAACACCCTCGCCCATGATGTTGTTATTACCAACAATAACATCAACAGTAACAACAGCAACGGTTTTCATTTGGTGAGCCATACTGGCTATGCCAACGCCATAACGAAGGTTGGAACCGACGAAGATTCTAACAGCAGCAGCGGCGTTACCGTGGAAGAATCCCTCCCTCACCATCAAATCAACTTGGACCTTTCCATTGGCCTTCCCTCTTCTCGGCAAGTTTCTTCTTCGGTGAACCCAGAAAAGTTGAAAGCGCAAGAGCATGATCAAAAACCGCATGTGTTGTACAATTGGTATGGGAACATTACTGGCCAAAGTGTTTGTCTTTGTTACAGTCTAGGGCTTCAAAGCGACCAAGCTTGTTATTGCAAAGGCATGGGTGCTACTGCTACTGCTACAACGGTTACTACAACTGCCACAGATAGTAATCTATATAGATTTTACAGACCCATGAATATTTAG	681	0.467	MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAAVSPPSTAAVPVATSSSNKKINSDSINSSNTLAHDVVITNNNINSNNSNGFHLVSHTGYANAITKVGTDEDSNSSSGVTVEESLPHHQINLDLSIGLPSSRQVSSSVNPEKLKAQEHDQKPHVLYNWYGNITGQSVCLCYSLGLQSDQACYCKGMGATATATTVTTTATDSNLYRFYRPMNI	226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g01155	226	Pfam	Myb-like DNA-binding domain	14	41	IPR001005	-
	Vian4g01155	226	Gene3D	-	7	53	-	-
	Vian4g01155	226	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	39	IPR017930	-
	Vian4g01155	226	ProSiteProfiles	Myb-like domain profile.	9	42	IPR001005	-
	Vian4g01155	226	SUPERFAMILY	Homeodomain-like	9	43	IPR009057	-
	Vian4g01155	226	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	45	-	-
	Vian4g01155	226	CDD	SANT	16	42	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g01155	Vian-Chr4	19783454	19784646	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g01155	1	46	MYB Transcription Factor Family	AT2G16720	84.783	3.88e-24	95.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Vian4g01155		Myb_DNA-binding	1.8e-07	CL0123