Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01149 ATGGCCGCAGAAATATGTGGCGCGTCTCTATTCTTATCCGCTAAAACTCAGCTGCAAGTGCAACTGCAACTGCAACTGCAACAACGACACCACCAGCGACTCGCGTTTCAACGAAGCAGAACAAGAAAAATCACTACCAGTGTTGTGTGCCAGGTCGCCAGCACCGACTTCGAATCCGCCGCCAAAGCCGGCGAGCATCGACTCTCTAAGGTGCCGGTGCGTAATATAAGAAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCGACGTTGGCGGATAAGTTGCTTCAGGTTACTGGCACGGTGCACCAGCGAGAAATGAAGGACCAGTTTCTTGATAACATGGACTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTCGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATCGATACACCAGGTCATGTCGACTTCTCGTATGAGGTTTCACGGTCACTTGCTGCATGTGAGGGTGCTCTTCTAGTAGTAGATGCTTCTCAGGGTGTTGAAGCACAAACCCTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCGGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAATGCGATTCTCTGCTCTGCAAAGGAAGGAATTGGTATAATTGATATTCTCAATGCAATTGTTGCAAGAATGCCCCCACCTGAAGATACATCTAAAAGACCATTGAGGGCTTTAATATTTGACAGCTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGTCTATAAAGAAAGGTGACAGAGTTTATTTCATGGCTAGTGGGAAGGATTACTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTTCAAGTTGAAGAACTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCGAGAGTGGGTGACACTATTACTCACTATGGCAGAAAGGCTGATAATTCACTTCCTGGATACGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAATTCCCTGATCTGCGTGATGCACTTGAAAAGCTACAACTCAATGATGCTGCACTAAAGTTTGAACCTGAGACCTCGAGTGCCATGGGGTTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTTCATATGGAAATTGTCCAGGAGAGACTTGAGAGAGAATACAATTTGAGCTTGATAACAACTGCTCCAAGTGTTGTGTACAGAGTAAACTGTGTAAATGGTGATACTGTTGAGTGCTCAAACCCATCTTTACTTCCTGAGCCTGGACAAAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAAGACTACATTGGTTCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTTAAAGAATTGAAATTTATTGCTGAAAATAGGGCATCAATTGTCTATGAATTACCATTAGCAGAGATGGTTGGCGATTTCTTTGATCAGTTGAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATACGTTTGTTGGGTACATCGAAAGTAATTTAATTAAACTTGACATAAGGATAAATGGTGACTGTGTGGAGCCATTGGCCACAATTGTGCACAACGATAAGGCGTATTCTGTGGGAAGGGCTTTGACTTTGAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAGTACCAATTCAAGCATGTATAGGATCAAAAGTGATTGCCAGCGAAGCGATATCTGCAATACGGAAGGATGTACTAGCCAAATGCTACGGTGGTGATATTACAAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTTCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGGTAATATGA 2016 0.4236 MAAEICGASLFLSAKTQLQVQLQLQLQQRHHQRLAFQRSRTRKITTSVVCQVASTDFESAAKAGEHRLSKVPVRNIRNFCIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARMPPPEDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGSIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGQRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGQFKELKFIAENRASIVYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGYIESNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYGGDITRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01149 671 CDD LepA 77 254 - -
Vian4g01149 671 CDD EF4_II 262 347 - -
Vian4g01149 671 Gene3D Elongation Factor G (Translational Gtpase), domain 3 357 438 - -
Vian4g01149 671 SMART EFG_C_a 469 557 IPR000640 -
Vian4g01149 671 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 114 129 IPR031157 -
Vian4g01149 671 Pfam Elongation factor Tu domain 2 276 346 IPR004161 GO:0005525
Vian4g01149 671 FunFam Elongation factor 4 73 256 - -
Vian4g01149 671 CDD lepA_C 472 551 IPR035654 -
Vian4g01149 671 Gene3D - 551 625 IPR038363 -
Vian4g01149 671 Gene3D - 73 256 IPR027417 -
Vian4g01149 671 PRINTS GTP-binding elongation factor signature 161 172 IPR000795 GO:0003924|GO:0005525
Vian4g01149 671 PRINTS GTP-binding elongation factor signature 78 91 IPR000795 GO:0003924|GO:0005525
Vian4g01149 671 PRINTS GTP-binding elongation factor signature 121 129 IPR000795 GO:0003924|GO:0005525
Vian4g01149 671 PRINTS GTP-binding elongation factor signature 145 155 IPR000795 GO:0003924|GO:0005525
Vian4g01149 671 PRINTS GTP-binding elongation factor signature 197 206 IPR000795 GO:0003924|GO:0005525
Vian4g01149 671 PANTHER TRANSLATION FACTOR GUF1-RELATED 49 666 IPR006297 GO:0005525
Vian4g01149 671 SUPERFAMILY Translation proteins 236 358 IPR009000 -
Vian4g01149 671 Hamap Elongation factor 4 [lepA]. 71 669 IPR006297 GO:0005525
Vian4g01149 671 FunFam Translation factor GUF1, mitochondrial 439 549 - -
Vian4g01149 671 FunFam Translation factor GUF1, mitochondrial 357 438 - -
Vian4g01149 671 Pfam Elongation factor G C-terminus 470 554 IPR000640 -
Vian4g01149 671 SUPERFAMILY EF-G C-terminal domain-like 470 564 IPR035647 -
Vian4g01149 671 Gene3D Translation factors 257 356 - -
Vian4g01149 671 FunFam Translation factor GUF1, mitochondrial 257 355 - -
Vian4g01149 671 CDD EF4_III 364 439 - -
Vian4g01149 671 Pfam Elongation factor Tu GTP binding domain 75 252 IPR000795 GO:0003924|GO:0005525
Vian4g01149 671 NCBIfam small GTP-binding protein domain 77 246 IPR005225 GO:0005525
Vian4g01149 671 SUPERFAMILY EF-G C-terminal domain-like 363 441 IPR035647 -
Vian4g01149 671 FunFam Translation factor GUF1, mitochondrial 551 625 - -
Vian4g01149 671 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 68 668 IPR027518 -
Vian4g01149 671 NCBIfam translation elongation factor 4 75 666 IPR006297 GO:0005525
Vian4g01149 671 Pfam GTP-binding protein LepA C-terminus 559 665 IPR013842 -
Vian4g01149 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 272 IPR027417 -
Vian4g01149 671 Gene3D - 439 549 - -
Vian4g01149 671 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 74 255 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01149 Vian-Chr4 19622219 19639387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01149 74 309 Eukaryotic Initiation Factors Gene Family AT3G22980 34.137 3.17e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01149 K21594 - gmx:100784073 1211.44