Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01140 ATGGAAGATGCAAGATTCAACCTTCCTCCTGGTTTTTTCTTCTCTCCAACTGATGAAGAACTTGTTCTTCACTTTCTCTATTGCAAGACTTCTCTTATTCCATGTCATCCCAACATCATTCCAGACCTCGATTCTCGCCTTCATCCTTGGGAACTAAATGGTAAGGCTTTGTTAAGTGGGAATCAGTACTATTTCTTTACCAAAGTGAATGAAAACAGAACAACGGAAAATGGGTGTTGGAAGGAAATAGGTGTGACGGAACCTATATTTTCAACTTTTGACAAGAAAGTGGGAACGAAGAAGTACTTGGTATTCCACATTGGTGAAGCTCCACATGTTACTGAAACCAGCTGGGTAATGCAAGAATATAATATATGTTCTTCTGGGTTTGGCACTGCGTCCTGTAGAAGTTCTAGGAGACGAAAACATGATCAAAGTTTGAGCCAGTGGGTTTTGTGCAGAGTGTACGAGAAGATGAGGTCTGAAGGTGTAAACTGCTATAGCGATGACGATGAGAGTGGATCAGAGCTTTCATGGTTAGATGAAGTTTATCTGTCGTTGGATGATGATCTTGATGAAATTGGCATGCCAAATTAG 597 0.407 MEDARFNLPPGFFFSPTDEELVLHFLYCKTSLIPCHPNIIPDLDSRLHPWELNGKALLSGNQYYFFTKVNENRTTENGCWKEIGVTEPIFSTFDKKVGTKKYLVFHIGEAPHVTETSWVMQEYNICSSGFGTASCRSSRRRKHDQSLSQWVLCRVYEKMRSEGVNCYSDDDESGSELSWLDEVYLSLDDDLDEIGMPN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01140 198 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Vian4g01140 198 Pfam No apical meristem (NAM) protein 9 124 IPR003441 GO:0003677|GO:0006355
Vian4g01140 198 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Vian4g01140 198 PANTHER NAC TRANSCRIPTION FACTOR 56 8 163 - -
Vian4g01140 198 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01140 Vian-Chr4 19375213 19376075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01140 7 162 NAC Transcription Factor Family AT1G61110 40.120 2.24e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian4g01140 NAM 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01140 - - gmx:100170711 347.821