Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01131 ATGAGCAACGCTTCACGAAAGCGCGCGGCGTCGGCGGTGGCGCCACAACCTCCGCCGCCAAAGCAAGTCTTAATGACTCAGGAAGAGGACTTCATGGACGAAGACGTGTTCATCGACCAAACCCTTGTTTCAGAAGATGAAGAGTCCCTCATTCTCCGCGACATCGAGCAGCGCCACGCCCTCGCCGCGCGGCTATCCAAGTGGACGCGTCCTCCTCTCTCTGATGATTACGTCGCACAATCTCGAGGCGTCGTTTTTCAGCAGTTGGAGATTGATTATGTGATCGGGGAGAGTCACAGGGAGTTGCTGCCGAACTTGTCTGGACCTGCTGCTATTATCAGAATTTTTGGTGTTACGAAAGAAGGACACAGTGTTTGCTGCAATGTTCACGGCTTTGAACCATATTTCTACATCTCTTGCCCTCCTGGAATGGGTCCAGATGATATCTCTCATTTTCACCAAGCACTTGAGGGAAGGATGAGAGAAGCCAATAGAAATAGTAATGTAGGAAAATTCGTTCGCCGCATTGAAATGGTGCAGAGGAGAAGTATTATGTACTATCAGCAATCTGATTCTCAGCCCTTTCTCAAAATAGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGGGGTATTCAGCTTGATGGTCTGGGAATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCTCTACGGTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCTGGCAGGAAAATATAAAAAGATAGTGAAAAGCTTGTCTTATTGCCAGTTGGAGTTTGATTGCCTGTATTCTGATTTGATTAGTCATGCTCCAGAAGGGGAGTATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCACTTTCCCGAGCCTAGCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAAGACCAGCCACTTATTCGTAATGTGATGACCCTTAAATCATGTTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACGGAAAGAGAAGTCCTACTTGCTTGGAGGGATTTTCTTCGGGAAGTGGACCCTGATATTATTATTGGATATAATATCTGCAAATTTGACCTGCCATATCTCATTGAGAGAGCTGCAAACCTGAAGATAGCAGAATTTCCAATTCTTGGCCGTATCAGGAACAGTAGAGTTCGGGTAAAGGATACAACTTTTTCATCAAGGCAGTATGGGACCAGGGAAAGTAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGACTTACTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCACTAAATTCTGTCTCAGCACACTTCCTTTCTGAGCAGAAAGAGGATGTCCATCATTCTATTATATCTGATCTTCAGAATGGAACTGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTTCCTCAGCGGCTTTTGGATAAACTGATGTTCATTTACAACTATGTGGAGATGGCTCGAGTAACAGGTGTTCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAGGCAAGACAGAAGAATCTGGTCATTCCTAATGTCAAGCAGGTTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCAAGAGCTGGATTTTATGAAAAACCAATCGCTACGTTAGATTTTGCATCCCTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTCACTTCTGAAGATGCTCGCAAGCTCAACATCCCTTCAGAGTCCTTGAACAGAACTCCATCTGGTGAAACATTTGTTAAATCAAATCTGCAGAAGGGAATACTGCCTGAAATACTTGAAGAGCTATTAACAGCCCGTAAAAGGGCAAAAGCAGATTTAAAGGAGGCAAAGGATCCCCTGGAGAGGGCAGTGCTAGATGGTAGGCAGCTGGCCCTGAAAATTAGTGCAAATTCCGTCTATGGGTTTACTGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACAAAAAAACTTGTGGAAGATAAATTCACGACACTTAATGGCTATGAACACAATGCTGAGGTAATATATGGAGACACGGATTCAGTCATGGTACAATTTGGTGTTTCTGCAGTAGAACAGGCCATGAACTTGGGGCGAGAAGCTGCCGAATATATAAGTGGAACTTTCACAAAACCCATCAAGCTAGAATTTGAGAAGGTTTATTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAAGTTCGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTGTTGGTCAAAAACCTGGTGAATGATTGTCTTCACAAAATACTGATTGACAGAGACATTCCAGGGGCTGTCCAGTATGTCAAGAACGCAATTTCAGATCTACTCAGGAATCGTATGGATTTATCACTGTTGGTTATTACAAAGGGTTTAACAAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCGGCCACTGCTCCAAATGTTGGAGACAGAGTACCTTATGTAATTATCAAAGGTGCAAAAGGTGCGAAGGCATATGAGAAATCAGAGGACCCTATTTATGTTCTAGAGAACAACATACCAATAGATGCTCAATACTATCTTGAGAATCAAATTAGCAAGCCGATCCTCAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAGAGAACTTCTCCATGGAAGTCATACAAGATCTATTTCTATTTCTACTCCGTCAAATAGTGGCTTATGGAAATTTGCTAAGAAAGAGCTTACCTGCATTGGCTGTAAAGCTGTATTAGGGAAGGATCATCACACCGTCTGTTCACATTGCAAAGGAAGGGAAGCTGAGCTATATTGTAAAACGGTATCTCGAGTGTCTGAGCTGGAGATGCATTTTGGGAAGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAAGATATTCTCTGCACAAGTCGGGATTGTCCAATCTTTTATCGACGAAAGAAGGCACAGAAAGAAATGTCTGAAGCACAATCACAATTGGACCGGTGGAGCTTTTAA 3261 0.4241 MSNASRKRAASAVAPQPPPPKQVLMTQEEDFMDEDVFIDQTLVSEDEESLILRDIEQRHALAARLSKWTRPPLSDDYVAQSRGVVFQQLEIDYVIGESHRELLPNLSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMGPDDISHFHQALEGRMREANRNSNVGKFVRRIEMVQRRSIMYYQQSDSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEILAGKYKKIVKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLVTLQGEDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDFLREVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGTAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNVKQVGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTSEDARKLNIPSESLNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLERAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEQAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLRNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKGAKGAKAYEKSEDPIYVLENNIPIDAQYYLENQISKPILRIFEPILKNASRELLHGSHTRSISISTPSNSGLWKFAKKELTCIGCKAVLGKDHHTVCSHCKGREAELYCKTVSRVSELEMHFGKLWTQCQECQGSLHQDILCTSRDCPIFYRRKKAQKEMSEAQSQLDRWSF 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01131 1086 Gene3D - 294 512 IPR036397 GO:0003676
Vian4g01131 1086 Gene3D DNA Polymerase, chain B, domain 1 89 265 - -
Vian4g01131 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166|GO:0003676
Vian4g01131 1086 SMART polmehr3 293 752 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian4g01131 1086 NCBIfam DNA polymerase (pol2) 348 957 - -
Vian4g01131 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166|GO:0003677
Vian4g01131 1086 CDD POLBc_delta 567 960 - -
Vian4g01131 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian4g01131 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian4g01131 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian4g01131 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Vian4g01131 1086 Gene3D - 814 969 IPR042087 -
Vian4g01131 1086 Pfam DNA polymerase family B, exonuclease domain 119 462 IPR006133 -
Vian4g01131 1086 FunFam DNA polymerase 641 693 - -
Vian4g01131 1086 CDD DNA_polB_delta_exo 289 518 - -
Vian4g01131 1086 MobiDBLite consensus disorder prediction 1 23 - -
Vian4g01131 1086 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Vian4g01131 1086 Gene3D Helix hairpin bin 641 693 - -
Vian4g01131 1086 FunFam DNA polymerase 814 970 - -
Vian4g01131 1086 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Vian4g01131 1086 FunFam DNA polymerase 90 265 - -
Vian4g01131 1086 FunFam DNA polymerase 333 566 - -
Vian4g01131 1086 Coils Coil 1067 1086 - -
Vian4g01131 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 69 1052 - -
Vian4g01131 1086 Gene3D Palm domain of DNA polymerase 568 797 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01131 Vian-Chr4 18912169 18924834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01131 4 1086 Core DNA Replication Machinery Family AT5G63960 79.692 0.0 1841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01131 K02327 - gmx:100817379 2030.76