Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01129 ATGGTAACTCCTCTAGTTCTAGGAATCAAGATATCCCTCTTGTTATGTTCATCAAGCACTACTAACCTCTCTCCACGAATCTCCTTTGCAAACCTCAACCGAAAATCATTGGTCATATCGAACCATTTCCCTAGACACTCCAATGCCACCATCTCAACACTCTGGGAGAGGTTTGGAACAAGTGGAGTGTGCCTCTGGATTTTATTTTCCCCCAAATCTTTGAGTTCCTCTCTCGCGGACAATAAGTTCTCTTCCTCTCGTGGCGACGACGAGACTGAAGGGTGTCAATGCCGACATCCCGGTGAGAAGATGGTGACCAGGTTCTTCATGACTTTCACCACGATGTCTTGGGTTTCATGGCGGCTCGCATCTGTTCGCGCAACAGCGTTGACGAGACGATGGAGGGTCGTGTTGGTCCTTATTCGTAGGTTCAGATATGCAGAAGTTGAGTTACGGCGGCGTTACGTCACGGTAGTCCTCATTCTCGCGATGGCAGAGGCACAATCAGTGAAGGAATCAACTTCTGTTCTGAAACACAAAGCTGTCCTTTTCAAGAATGGACTCTGCAGTATCGTCCACAGTACCTGCATGCGTCTTGCCACACTGTATAAGCGCCTCAACGATTCCGCGGTAACATTCCCCTACGACAAGGGAACGGCATCGCTGTTATCTCTCGTGAAGACTTTCGACTCCGTTCTCGCCGTTTATGAAGGCTTCTGCAACCTAAAACAGGTTGGTCTGAGGCTCAAAGTGTGTCGCGGTGACTCGGTTCGAAAGGTTCTGGTGCAAGAGGCTAAGACGTTTGGCGTTTCCACGGTGATTTTGGGAACTTCTAAGTCTCATCACACTATTCGCTCGTCCGCGTGGGTCGCGAAGTACTGTGCGAAGAAATTGCCCAAGTGTATCTCTGTTTTCTCTGTAGATAATGGAAAAATTGCTTTCCGAAGAGAAGCTAATGGAAATTGTGGTGATCGAGAAAAATCACCCGAAGGGTCAAGTTTGTCGCCAAAGTCGTTGGTGGTGTATACAAAGAAGAATCTGAAGACTTGCGAAAGTTGTGCATTGCAAGAGATTTCTGGGACTGAGTTTGAGAGAGGTTTGTGTGATGCTGTTGAGAAGGGTGATTCGCTTGCTTTGGTCCCGTTTAAGAAACTTGAAGATGGTCCTTGTTTTTCAGTTGTTGTGGATAATTCGAAGCGTAAACCTGGCTGGTCACTGCTTCGCAATGTGTTTCATCACAAGAAGCATTCCCCAAAATCTTCCACGAAAAATACATATATTTTTCAACGGGCGTTGCGGCAGCCGAGTTTTCATTCTTCTGCTGTAGTCCATCCAGATCATAAACAAATTGGTATTGAGCAGATTGATGATTCCCCTCTCGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTTCTACTATTTTTACTCCTCCCTCCATTAGCTATGAGTCGGGTAGCCTACCTGAAGAATTGTTGATATTACAAGAAAAGTACTCATCTTCGTGCACTTTACATAGTTTGCAGGAGCTTGTATCTGCAACCTCCAACTTCGCACCAGGTATTTTCTCAATTGTTTCAGAGAATTTGGTTGGCAAAGGTGGTTGTAGTTATGTTTACCGAGGATGTCTTCCAGATGGCAAGGAATTGGCCGTGAAAATTTTGAAGCCGTCTGAAAACGTGGTAAAGGAGTTTGTTCAGGAAATTGAGATCATTACGACTTTGTGCCACAAGAGCATAATATCTGTATCTGGCTTTTGTTTAGAGGGCAACCATTTGCTACTAGTATATGATTTTTTGTCAAGGGGAAGCCTAGAAGAAAACCTCCATGGCAACAAGGCGGACTGTAGTGCATTTGGTTGGCAAGAAAGATACAAGGTGGCTGTGGGTGTAGCTGAGGCACTGGACTATCTGCATAATGGCTGTGCTCAGGCTGTTATCCATAGGGATGTGAAATCTTCTAATATCCTTCTTTCAGATGATTTTGAGCCTAAGCTTTCAGATTTTGGACTGGCTAGTTGGGGTTCATCTTCTTCCCATGTTACTTGTACCGATGTAGCTGGAACTTTTGGATACCTCGCACCTGAGTATTTTATGCACGGTAAAGTGACTGATAAAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGAATGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACCAATATTGAAAGGTGGGAAGTTTCCTCAGTTGTTTGATCCAAACCTAGGCATTGAATACGATGATGGCCAGATGAAGAGAATGGTTTTGGCCGCTAGTCTCTGCATTAGACGGGAACCTAGACTGCGGCCTCAAATCAACCTGATATTGAAACTTCTTCGTGGTGATGAAGAGGTCACAAGATGGGCAGAACAAGAAGTTAATTCACCGCAGGAACTTGATGGTTTTGAGGAGGAACCAATTCCAACTAACATACAGTCCCACCTGAACCTTGCTTTGATGGATTTGGAGGATGATACAGTTTCTATAAGTAGCACTGAGCAGAGTGTCTCTTTGGAGGACTATTTGCAGGGAAGATGGAGTCGCTGTTCAAGTTTTGACTGA 2610 0.4506 MVTPLVLGIKISLLLCSSSTTNLSPRISFANLNRKSLVISNHFPRHSNATISTLWERFGTSGVCLWILFSPKSLSSSLADNKFSSSRGDDETEGCQCRHPGEKMVTRFFMTFTTMSWVSWRLASVRATALTRRWRVVLVLIRRFRYAEVELRRRYVTVVLILAMAEAQSVKESTSVLKHKAVLFKNGLCSIVHSTCMRLATLYKRLNDSAVTFPYDKGTASLLSLVKTFDSVLAVYEGFCNLKQVGLRLKVCRGDSVRKVLVQEAKTFGVSTVILGTSKSHHTIRSSAWVAKYCAKKLPKCISVFSVDNGKIAFRREANGNCGDREKSPEGSSLSPKSLVVYTKKNLKTCESCALQEISGTEFERGLCDAVEKGDSLALVPFKKLEDGPCFSVVVDNSKRKPGWSLLRNVFHHKKHSPKSSTKNTYIFQRALRQPSFHSSAVVHPDHKQIGIEQIDDSPLDGVSGAIVPFGSSTIFTPPSISYESGSLPEELLILQEKYSSSCTLHSLQELVSATSNFAPGIFSIVSENLVGKGGCSYVYRGCLPDGKELAVKILKPSENVVKEFVQEIEIITTLCHKSIISVSGFCLEGNHLLLVYDFLSRGSLEENLHGNKADCSAFGWQERYKVAVGVAEALDYLHNGCAQAVIHRDVKSSNILLSDDFEPKLSDFGLASWGSSSSHVTCTDVAGTFGYLAPEYFMHGKVTDKIDVYAFGVVLLELLSNRKPINNECPKGQESLVMWATPILKGGKFPQLFDPNLGIEYDDGQMKRMVLAASLCIRREPRLRPQINLILKLLRGDEEVTRWAEQEVNSPQELDGFEEEPIPTNIQSHLNLALMDLEDDTVSISSTEQSVSLEDYLQGRWSRCSSFD 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01129 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Vian4g01129 869 Gene3D Transferase(Phosphotransferase) domain 1 600 815 - -
Vian4g01129 869 Pfam Protein kinase domain 528 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01129 869 ProSiteProfiles Protein kinase domain profile. 525 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01129 869 Gene3D Phosphorylase Kinase; domain 1 488 599 - -
Vian4g01129 869 PANTHER OS08G0249100 PROTEIN 285 820 IPR046958 -
Vian4g01129 869 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 487 599 - -
Vian4g01129 869 FunFam Putative receptor-like serine/threonine-protein kinase 600 811 - -
Vian4g01129 869 SUPERFAMILY Protein kinase-like (PK-like) 527 802 IPR011009 -
Vian4g01129 869 SMART serkin_6 525 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01129 Vian-Chr4 18797707 18806311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01129 501 796 Trihelix Transcription Factor Family AT1G68690 43.831 9.06e-72 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian4g01129 Pkinase 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01129 - - gmx:100815722 1131.32