Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01120 ATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCCGAAAAGAACCTTGTCCAATCTAATACCACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAATCTTCACTTCAACATGACAGAGGGTCAATTAAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAGCTAGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTACCGGTTGGGAATGGGTCAGCTCCTGCTCAACAGGCTATGATGCCTATTGGTAATCCAGGTGTAATATCAGCACCAGCTGTCCCTACGCAAATTGTGCCTACCCCGGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCCAACACTGAGACTGAGCCAGATTTTGATCTAGACATTAAAGAGGACGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAACATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAATTTGAAACAGTCGAAGCAGCTGGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGCAACCTCAGATATACGAAGCCAACTTTAAAGGGGACGCTTGA 945 0.4508 MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVVGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVISAPAVPTQIVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAAGAAQRAMHTRWFAGRMISAIYMQPQIYEANFKGDA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01120 314 FunFam Splicing factor CC1-like 35 140 - -
Vian4g01120 314 SUPERFAMILY RNA-binding domain, RBD 35 129 IPR035979 GO:0003676
Vian4g01120 314 CDD RRM3_RBM39_like 219 301 - -
Vian4g01120 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vian4g01120 314 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 310 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vian4g01120 314 Gene3D - 216 313 IPR012677 -
Vian4g01120 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 296 IPR000504 GO:0003723
Vian4g01120 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Vian4g01120 314 CDD RRM2_RBM23_RBM39 53 130 - -
Vian4g01120 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 303 IPR000504 GO:0003723
Vian4g01120 314 NCBIfam splicing factor, CC1-like family 1 310 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vian4g01120 314 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vian4g01120 314 SMART rrm1_1 221 299 IPR000504 GO:0003723
Vian4g01120 314 FunFam Splicing factor, CC1-like protein 215 314 - -
Vian4g01120 314 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 144 238 IPR029123 -
Vian4g01120 314 SUPERFAMILY RNA-binding domain, RBD 217 302 IPR035979 GO:0003676
Vian4g01120 314 Gene3D - 47 143 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01120 Vian-Chr4 18516375 18519643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01120 53 311 Eukaryotic Initiation Factors Gene Family AT4G34110 23.958 1.40e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03624 1 58975063 58978844 Vian4g01120 4 18516375 18519643 ECH
Vian4g01120 4 18516375 18519643 Vian4g01120 4 18516375 18519643 ECH
Vian1g03624 1 58975063 58978844 Vian4g01120 4 18516375 18519643 PCT