Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01114 ATGAGACCGCTTAGCCAAACGAAGCAGTTGTTGGCGGTTACGGTTCAGAGGCATCAGTTCTGGCACGAGTCTCGAAACGTGAAGGTCTCGGTGTGGTGGGATTTCGAGAACTGCCAGGTGCCAGCGGGGGTTGACGTTTCGAATGTGGCGCCGGCGATCACGAAGGCTGTGAGAGCGAGTGGTATTAAGGGCCCTCTCCGAATCAACGCTTTCGGTGATATTCTGCAGCTGTCAAAATCCAACCGGCAAGCACTTTCTCACACCGGCATTCATTTCACCCACATTCGAGGTGGAAAGAACAGTGCCGATAGATTTATTGTCATGAATCTTATGGACTGGATTTCTCAAAATCCTCCTCCTGCCCATCTCTTTCTGATATCTGGTGATGGAGACTTTGCTAGAATGTTACACCGGTTAAGAATGCATAATTACAATATATTACTTGCTAGCACAAGGAATGCTCCTGAGGTCCTCTGCAGTGCAGCAACAATAATATGGCAATGGTCTTCATTAGTAAAGGGGGAACATTTTTCTGGAAAACATTTAAACCATCCTCCTGATGGTTTGTTTGGTTCTTGGTCTGGAAATTACAATGTGATTCCTGACAAACCATTCTCAGATGTTGAGAAGTCTGCATCTTCACAAAAAGTAGACATATACAAACCTTCCTTAGATTTGCAAACTGTTCCAAAAGAAGTTATAATACATGTTTGCCATATATTTAGATCACATCCAAACGGAATCTCAATTGGAGATCTTCATAGACGGTTGAAGAAACGCAAAGTGGATTTTGGTGAAAAGTTTTATGGATATGGATCATTTACTCGCTTTCTAACATCAACAATGCATGTAAAGCTTGAGCCTTTAGGCTTGGGTAAATTTCATGTATGTCTTATCCCCTCAGAATCCCCCAAACCTTTTGAGTTCAAAGATGTGGAATCAGTATCATCTTGTATAAAGATGGATGAGAAGGGATCTGCATCAACTCCAAAGCTAAATGGTGAGGATAAAAACAAGGTTAGAGAAGAAAATTGGAGACCCTTAATTGCCTCATCCCATGAAAGGAGTATGGATGATGATTCAAAATTATCACTTTTATCGGTTGAAAACCCAGATACGTTACAGAAATTTTCAGTGCGTAATGGCAATGTTGTTGATATGACTACTGAACAACTGTCAGAGATTCAACCACAACACAGGGACAATCAACTTTCCAAAACTAAGCCAGATTCCTTAAAATTGAGTTCAAGTTCTAAAACATTATCTGGTTGTGACACTGTTGGCTCTGAGGATGCAATTTATAGAATTCAGGAAAAATACACGACTTCAAGGAATCACTCTGCTGGAAATAATCAGACAGCAAAAGAAGACATTGTTTCTGCAATATATGAATCTGCTAATGTTAGAGCAATGAACAAATCCGAGAATTCAACTAGAAAAGAGGTTGGTGAAGTTTGTCACAGCCCATATTCTACAGAAGCTGATCACTCTCTGCTTGACAAAATACCTAGTGGAAGTGATAAAACTAATAGGAGTGCTCCAACATTCTTTGTCTGGATCAGAAACTGGTGGAAATTTTGGAAGGGGAATGCAGAATCTGGTGTTTCAGCTGATTCTAACCCATCTGAACTCGTAGAGCAAACTATTCAGGTTGTGAGTGATTTTAAAGAACCCAAGTTATCAGATCTGGACCAACCTGAGTTGTTTTCTAGCGGTTCCTTTTGGGATGACATAGAAACTTTTGTTTTCACGCTCAAAGGATCATTTATTGTTTCCCAGTCGAAAAACAGGGAAGATATGGCATATAAATTGCTAAAAGATGGACCTCCAGTTATAAGATCTCTCACTGAAGAAGATATTCTTCAATTGGTGGAATTGTTAATATTAAAGAAAAAGTGGTTGGAAGAAATCCCTTCTTTCCCAAGACTGTCGGTTGATAGGTATGACTATCATGTTGATAGGTATGGCTATCATCGTGAATTACAGAAGCTACACATTGGCATAATGCCAGAAGTTAAAGTAGAGCCCACTTGTAGTGTGCCTCTGAAGGGAAAACTTTTAATTTCAAAAACTCAGGTAACCACTTCCTCTCATGCTCGTGCAGTTTCAAACTTAGTGAATTATGTGATTCTGCTCCCAAAGATGATAGCATCAACTCTCAATTGGAATAATTAG 2175 0.3995 MRPLSQTKQLLAVTVQRHQFWHESRNVKVSVWWDFENCQVPAGVDVSNVAPAITKAVRASGIKGPLRINAFGDILQLSKSNRQALSHTGIHFTHIRGGKNSADRFIVMNLMDWISQNPPPAHLFLISGDGDFARMLHRLRMHNYNILLASTRNAPEVLCSAATIIWQWSSLVKGEHFSGKHLNHPPDGLFGSWSGNYNVIPDKPFSDVEKSASSQKVDIYKPSLDLQTVPKEVIIHVCHIFRSHPNGISIGDLHRRLKKRKVDFGEKFYGYGSFTRFLTSTMHVKLEPLGLGKFHVCLIPSESPKPFEFKDVESVSSCIKMDEKGSASTPKLNGEDKNKVREENWRPLIASSHERSMDDDSKLSLLSVENPDTLQKFSVRNGNVVDMTTEQLSEIQPQHRDNQLSKTKPDSLKLSSSSKTLSGCDTVGSEDAIYRIQEKYTTSRNHSAGNNQTAKEDIVSAIYESANVRAMNKSENSTRKEVGEVCHSPYSTEADHSLLDKIPSGSDKTNRSAPTFFVWIRNWWKFWKGNAESGVSADSNPSELVEQTIQVVSDFKEPKLSDLDQPELFSSGSFWDDIETFVFTLKGSFIVSQSKNREDMAYKLLKDGPPVIRSLTEEDILQLVELLILKKKWLEEIPSFPRLSVDRYDYHVDRYGYHRELQKLHIGIMPEVKVEPTCSVPLKGKLLISKTQVTTSSHARAVSNLVNYVILLPKMIASTLNWNN 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01114 724 ProSiteProfiles OST-type HTH domain profile. 229 300 IPR025605 -
Vian4g01114 724 PANTHER LIMKAIN B LKAP 14 651 IPR024768 GO:0005777|GO:0010468
Vian4g01114 724 Pfam OST-HTH/LOTUS domain 240 291 IPR025605 -
Vian4g01114 724 CDD PIN_limkain_b1_N_like 28 150 - -
Vian4g01114 724 Gene3D - 21 169 - -
Vian4g01114 724 MobiDBLite consensus disorder prediction 393 421 - -
Vian4g01114 724 Pfam NYN domain 28 162 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01114 Vian-Chr4 18264452 18267659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01114 27 174 C2H2 Transcription Factor Family AT5G61190 42.953 4.10e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01114 - - vun:114196141 1086.25