Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01105 ATGCTGGAAGTTTCTGCTTCACCGGAAACTCCTCTTGCCAATCCGGAGGGAGGCGCCGCGGCTGTCTCCGAGGGGCTCAAAGCGGAGGACGGCGAAGCCGGTGACCGGAATTCCGCCGCCAGTCGATGGCCTAAAGAGGAAACAATGGCTTTGCTCAAGATAAGGTCTGACATGGACGTTGCTTTCAGGGATACAAACCCCAAAGCCCCTCTCTGGGACCAAGTCTCAAAGAAATTAGCGGAACTAGGTTATAACAGGAGTTCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACGGTAGCAAGACTTATAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGACACCACTCACTTCCGACTCCCTCTGTAAGCGCCCCAGAAACAGCAACGACGACGACGACGACCCACGTGCCCGACAACAACACCAACGTCGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCGTACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGCTCCGGTAAGGGGTTTAGGAAGAGGAAGCTGACGCAGTTTCTGGATGGGTTGATGAGGGAAGTGATAGAGAAGCAGGAGACGCTGCAGAGGAAGTTCGTGGAGGTGTTGGAGAAGTGCGAGAAGGATCGAATGGCAAGGGAAGAAGCGTGGAAGAAGGAGGAGCTGGCGCTGATTAAGAAAGAGCGCGAGCTTCTGGCTCAGGAACGCTCCATCGCCGCGGCTAAAGATGAAGTCGTCCTTGCTTTTCTAAGAAAGTTCACCCAAGTTGAAGGCGTGGTGCAGTTGCTGGAGAAAATCCAGGGTCAAAACAACGGGCACAGGGACATGCAACAAAGTGGGAATATCAATGCTGCGGCTAATGGAGGTGGTGGTGGTGATAGTGATGTGAGTGATATGGATAAGCGAGAGTGTGGGAATAATCTGAGTGTTAGGAATTTCGTGCATATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTGAGGACTGAACTTGATGTGCAGTCTCAAGGGAACAATAATAGCAGTAATGGTGTGTCCAAGGGGCCACTTTGGGAGGACATATCTTCGGCCATGAAGGGCCTTGGCTACGAACGCAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAAACCTGTCCCTATTATCACCACCTGGAGGTTTTGTACAGCAAGAAGCCCAAGAGGGCTGATGTAAAGGATTTTGGGAAGGAGTTGAAGCCCGAGGAGCTGTTGTTGCATATCATGGAGAGTCAAAGTCAAGAAGAGAGACAAGCGCAGCAACAACAGGTACAGAGTCACTCATCATCCGAAGATGGGGAGAAAGATGATAGGGATCAGCGTGAGGGAGATGAAGAAGATCAAAATGGGTTTCAGAATGTGATGCTTGAAAATAGTCCTTCCAGAGCTATCATGAGTTAA 1545 0.4964 MLEVSASPETPLANPEGGAAAVSEGLKAEDGEAGDRNSAASRWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAELGYNRSSKKCKEKFENIYKYHRRTKEGRCGKSNGSKTYRFFEQLEALEGHHSLPTPSVSAPETATTTTTTHVPDNNTNVDVILDAVPCSVSAYVGEHSSSTTSCSGKGFRKRKLTQFLDGLMREVIEKQETLQRKFVEVLEKCEKDRMAREEAWKKEELALIKKERELLAQERSIAAAKDEVVLAFLRKFTQVEGVVQLLEKIQGQNNGHRDMQQSGNINAAANGGGGGDSDVSDMDKRECGNNLSVRNFVHMSSSRWPKDEVEALIRLRTELDVQSQGNNNSSNGVSKGPLWEDISSAMKGLGYERSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEVLYSKKPKRADVKDFGKELKPEELLLHIMESQSQEERQAQQQQVQSHSSSEDGEKDDRDQREGDEEDQNGFQNVMLENSPSRAIMS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01105 514 ProSiteProfiles Myb-like domain profile. 337 401 IPR001005 -
Vian4g01105 514 Gene3D - 339 406 - -
Vian4g01105 514 Gene3D - 43 104 - -
Vian4g01105 514 Coils Coil 242 262 - -
Vian4g01105 514 CDD GT1 41 106 - -
Vian4g01105 514 CDD GT1 337 408 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 459 514 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 1 44 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 137 153 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 289 303 - -
Vian4g01105 514 SMART sant 335 403 IPR001005 -
Vian4g01105 514 SMART sant 39 101 IPR001005 -
Vian4g01105 514 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Vian4g01105 514 FunFam Trihelix transcription factor GT-2 339 406 - -
Vian4g01105 514 FunFam Trihelix transcription factor GT-2 43 104 - -
Vian4g01105 514 PANTHER FI21293P1 23 491 - -
Vian4g01105 514 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Vian4g01105 514 Pfam Myb/SANT-like DNA-binding domain 337 428 IPR044822 -
Vian4g01105 514 MobiDBLite consensus disorder prediction 132 153 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 477 496 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 289 316 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 28 44 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 499 514 - -
Vian4g01105 514 MobiDBLite consensus disorder prediction 459 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01105 Vian-Chr4 17848587 17850314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01105 32 436 Trihelix Transcription Factor Family AT1G76880 43.074 5.49e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian4g01105 Myb_DNA-bind_4 3.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01105 - - pvu:PHAVU_009G147500g 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01105 4 17848587 17850314 Vian4g01105 4 17848587 17850314 ECH