Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01103 ATGTATTCTTCTGCTGCTACTTTCTTTCCTTCACTCCTCCATGACCTTGAGAACTTCCACTCAAGAAGGTTGCTTCTTCACTCCCCACTGAACCAATCAGCCAAGCCTCCGGCAACCCCCCACGATTCCACAGAAACATATCTAGGAGACGGAAATTTCGATGCAAATGTTGTGATGGTACTCTCAGTACTACTCTGTGCACTAATTTGCTCCTTGGGTTTGAACTCCATCATCAGGTGTGCACTAAGGTGTTCGAATTTCGTAGTGAGTGACTCAGTGGCAACGAACAGCCCTCCAGCGAGAGTTGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTGACTTACTCGGCTGAGCTTAACCTGCCGAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCACAAGTGGTGAAAAGGTGCGCATTTTGCCAAAGTGCAACCACGGATTCCACGTACGCTGCATTGACATGTGGCTGAGTTCACACTCTTCATGCCCCAAATGCAGACACTGCCTGATCGAGACTTGCCAAAAGATTGTTGGCTGCACTCAGCAAGCTAGCTCCTCTCAACAACCCGTCTTGCAGGTGCCAGAAACCATTCTCACCATTACGCCACTGGACCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTTAG 675 0.4874 MYSSAATFFPSLLHDLENFHSRRLLLHSPLNQSAKPPATPHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNSPPARVANTGVKKKALKTFPTVTYSAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHVRCIDMWLSSHSSCPKCRHCLIETCQKIVGCTQQASSSQQPVLQVPETILTITPLDPEGLVRNYREL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01103 224 CDD RING-H2_EL5-like 132 175 - -
Vian4g01103 224 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Vian4g01103 224 Pfam Ring finger domain 132 175 IPR001841 -
Vian4g01103 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Vian4g01103 224 PANTHER RING-H2 FINGER PROTEIN ATL78 16 217 IPR044602 GO:0016567|GO:0016740
Vian4g01103 224 SUPERFAMILY RING/U-box 111 180 - -
Vian4g01103 224 FunFam RING-H2 finger protein ATL73 92 180 - -
Vian4g01103 224 SMART ring_2 133 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01103 Vian-Chr4 17813893 17814567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01103 23 179 C3H Transcription Factor Family AT3G10910 47.239 1.06e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01103 K19040 - gmx:100807227 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01103 4 17813893 17814567 Vian4g01103 4 17813893 17814567 ECH
Vian10g00904 10 9188708 9189361 Vian4g01103 4 17813893 17814567 ECH
Vian1g03638 1 59109537 59110205 Vian4g01103 4 17813893 17814567 PCT