Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01099 ATGAAGGCTGTTAAAGGATGGGCAAGGCAAATTTTAAATGGTTTAAATTATCTTCACAGTCACAACCCACCTATTATGCATAGGGACCTGAAGTGTGATAATATATTCATCAATGGTCACCGAGGAGAAGTTAAGATTGGAGATCTAGGGTTGGCAACTCTAATCAAACAAACTAATGCCAGGAGTGTAATTGGAACCCCGGAGTTCATGGCACCTGAACTGTATGATGAACATTATAATGAATTAGTGGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTTACGTCTGAATATCCTTACAGTGAATGTAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCTGGCATTAAGCCTGTTGCTCTTTCCAAACTCAAAAATCAAGAAGTAAAATCATTTATTGAGAAATGTCTTGTCCCAGCGTCTCAAAGACTGACAGCAAAGGAGCTTTTGATGGACAATTTTCTGCAAGTGACTGGTTCATTGAAGAATCGTCGTCTACCATTACCAGATATCGTTCTCCCTAAGTATGGAGCCTATGAAAATCGTTGTCTTATGTCAGAAGGTCCTGCTAGTACGCGTATTAGATCCATTTCAATGGATCTTGGTGATGCCACCGAGCAACCATTCACCACTTTACTTTATAATTCTGTTGATTCTGTTGATTCTCCTGATGATGTTTTGCCTTCTCCATGTGTTGAGATAAGAAGGTTAAAGGAAGGTGACATTTTTTTTCTAAAAGGTGAACAGAATGATCAAAAGTCTGTGTCATTAGTTCTCCGCATAGCTGATCAAAGTGGGCGGGCAAGAAATATCCATTTCATATTCTACATCAACAGTGATACTGCAATTTCAGTTTCAAGTGAAATGGTTGAGCAACTTGAACTGGCTGAGCACAATGTTAAATTCATAGCAGAGTTGATCGATCTATTATTGACCACATTGCTTCCTGATTGGAAACCTTGTGTACAAATTGATCATTTAGTTGCTTGTAATAGTAAATCATCTCATCCAAGTCAACAAACACGAAGCTCAAGAGATTCCATCCAAATTGTGTCTGGAGGTGGTCCAGGTCTCCCAATCTCACGTAGAAGATCAACAGATAAGGAGAACAAAGATAATGTCATTTCTGACAAGGTTTTATCTAATACAAGCATTAGTCTTCAAGGAGATGCAAAGATAGACGACTCTTGTTCTGAGACGTCACAAACTGGTGCAACATTTGACTTCAACGAAAAGCATTTTTCTACAGTTTCATTCATGTCTGCTAAATCAGGATTTACAGACTTTGACTTGCACAGAGTTAATAGTCAAACCTCACTTGTATCTGAATTCGAGGCTTCGTCTGAATATAGGAATTTTCCACGTGTGGAAAGCTATGGTACCATGAAATTCTTTAATTACCCTATGAATGCTCCCCCCTCCTTCAATGAAGCTGAGGATGAGTTGAGAATAGAGTTAGAGATGATTGAACAACAATATCAAGAAGCAATTAGAGATTTATCAAAAAGAAGATATCAGGCCATCACCGAGGCTAGGAAGAGGGTATCACATAAATTTCCAAACTTTAAATAA 1581 0.382 MKAVKGWARQILNGLNYLHSHNPPIMHRDLKCDNIFINGHRGEVKIGDLGLATLIKQTNARSVIGTPEFMAPELYDEHYNELVDIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKLKNQEVKSFIEKCLVPASQRLTAKELLMDNFLQVTGSLKNRRLPLPDIVLPKYGAYENRCLMSEGPASTRIRSISMDLGDATEQPFTTLLYNSVDSVDSPDDVLPSPCVEIRRLKEGDIFFLKGEQNDQKSVSLVLRIADQSGRARNIHFIFYINSDTAISVSSEMVEQLELAEHNVKFIAELIDLLLTTLLPDWKPCVQIDHLVACNSKSSHPSQQTRSSRDSIQIVSGGGPGLPISRRRSTDKENKDNVISDKVLSNTSISLQGDAKIDDSCSETSQTGATFDFNEKHFSTVSFMSAKSGFTDFDLHRVNSQTSLVSEFEASSEYRNFPRVESYGTMKFFNYPMNAPPSFNEAEDELRIELEMIEQQYQEAIRDLSKRRYQAITEARKRVSHKFPNFK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01099 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Vian4g01099 526 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01099 526 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 412 - -
Vian4g01099 526 Gene3D Transferase(Phosphotransferase) domain 1 1 164 - -
Vian4g01099 526 FunFam Serine/threonine-protein kinase WNK8 256 350 - -
Vian4g01099 526 Pfam Protein kinase domain 2 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01099 526 Coils Coil 478 502 - -
Vian4g01099 526 FunFam probable serine/threonine-protein kinase WNK9 1 163 - -
Vian4g01099 526 MobiDBLite consensus disorder prediction 336 353 - -
Vian4g01099 526 SUPERFAMILY Protein kinase-like (PK-like) 3 159 IPR011009 -
Vian4g01099 526 MobiDBLite consensus disorder prediction 336 374 - -
Vian4g01099 526 Gene3D - 256 344 - -
Vian4g01099 526 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 258 311 IPR024678 GO:0004674|GO:0005524
Vian4g01099 526 SMART serkin_6 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01099 Vian-Chr4 17769491 17771360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01099 1 370 MAP Kinase Kinase Kinase AT1G49160 62.432 2.12e-165 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vian4g01099 Pkinase 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01099 K08867 - gmx:121175054 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01099 4 17769491 17771360 Vian4g01099 4 17769491 17771360 ECH
Vian1g03642 1 59157558 59160343 Vian4g01099 4 17769491 17771360 PCT