Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01098 ATGGTAAGAGCAAGAGACGATCTATGCATCAACGTTCCCACTTTCTTCACGTGCCCTATTTCTCTTGATCTCATGAAATCCCCTGTCAGTCTCTGCACCGGAATCACCTACGATCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCAACCATGCAACTCCTCAAAACCAAAGACTTCGTTCCCAACCGAACTCTGCAAAGCCTCATCCAGATCTGGTCCGATTCCCTTCGCCATTCAACTATCCTCTCCCCGGACCAGGTCCTCCTAACCGTCTCTCAATTGGAAACCCCCTCTCTCCGCTCTGCTTCGCTCACCAAACTGCTCCTCTTCGCCACAGATTCTCACCATAACAAACTCTTCCTTTCCAACCTAGAACGCTTGGTCAACCAACTCATTCGTTTCCTCCACAATGTCGACGGAGGACTCATCGCCAGAGCTAACATTCAATTTCTCGAACAAGTCGTCCTTCTGTTAGCTCTGATTCTCGATGGCGTCGAAGATCGCGATGGATTGAGAAACTCTTTGCTCAAAGGAAACAAACAGAGCCTAGATTCTCTTCTTCTCGTTCTGAAACGAGGAGGCTGCGATTCGAGATTCGCCTCCGCCAGGGTTCTGCAGTTCATCGCCGCGGACGCCGAGTCGAAGATTTTAGTAGCCGAGAAGGAAGGCGTGGTTGCGGAATTGCTGAAGTCGGCGGCGCCGGAGAACGATCCGGCGCTGGTCGAGGCCGCGCTGGCGAGCCTGATCGCGATTTCGGCGCCGAAGCGGAACAAACTGAAGCTGGTGAGTCTCGGCGCGGTGAGGGCGCTGTCGAGGCTGTTGGCGGAGGCGGAGCTGGGAGCGGCGACGGTGGAGAAGGTACTGAAGCTGGTGGAGGCGGTTTCTTCGACGAGGGAGGGGCGGAAGGAGATATGCGAGGACGCGGTGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCTACCGTGGCGACGGAGCATGCTGTGACGACGCTGTGGAGCTTGTGCTACCTGTTTCGCGATCGCAAGGCACTGGAGGCAGTGACGCAGGCCAATGGTTTGACCAAGATTCTGTTGCTGATGCAGAGCAACTGTACGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTGAACTCCAAGTCATGCCTCACGTGCTACGACACCAAGACCACGCATATCATGCCGTTTTGA 1227 0.5558 MVRARDDLCINVPTFFTCPISLDLMKSPVSLCTGITYDRSSIQRWLDAGNNTCPATMQLLKTKDFVPNRTLQSLIQIWSDSLRHSTILSPDQVLLTVSQLETPSLRSASLTKLLLFATDSHHNKLFLSNLERLVNQLIRFLHNVDGGLIARANIQFLEQVVLLLALILDGVEDRDGLRNSLLKGNKQSLDSLLLVLKRGGCDSRFASARVLQFIAADAESKILVAEKEGVVAELLKSAAPENDPALVEAALASLIAISAPKRNKLKLVSLGAVRALSRLLAEAELGAATVEKVLKLVEAVSSTREGRKEICEDAVCVAAVLSKVLKVSTVATEHAVTTLWSLCYLFRDRKALEAVTQANGLTKILLLMQSNCTPQVRQMCTDLLKIFRVNSKSCLTCYDTKTTHIMPF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01098 408 PANTHER WDSAM1 PROTEIN 11 395 IPR045185 GO:0061630
Vian4g01098 408 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Vian4g01098 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 84 IPR013083 -
Vian4g01098 408 SUPERFAMILY RING/U-box 6 80 - -
Vian4g01098 408 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Vian4g01098 408 CDD RING-Ubox_PUB 13 65 IPR045210 -
Vian4g01098 408 Gene3D - 182 400 IPR011989 -
Vian4g01098 408 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Vian4g01098 408 SUPERFAMILY ARM repeat 181 395 IPR016024 -
Vian4g01098 408 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01098 Vian-Chr4 17717721 17718947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01098 5 408 U-box Gene Family AT5G64660 49.043 4.04e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01098 - - gmx:100801033 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01098 4 17717721 17718947 Vian4g01098 4 17717721 17718947 ECH
Vian4g01098 4 17717721 17718947 Vian1g03645 1 59193235 59194491 ECH
Vian1g03645 1 59193235 59194491 Vian4g01098 4 17717721 17718947 PCT