Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01091 ATGCCTCCAGCCACCTCTTCGCCTACGGCTCAGAGACACGTTGGCTTCAGCCGCCGCACGCAGGCGCCGTTCCAGCTCAACGACTCCTCGAGTCAGCTCCATGATGACTCGCCGCCGGCGAAGAAGTACCGGCTGATGTCAGACATTATGGCGCGTGCCCAGTATGCGGTGGTGGAAAGAGAGACTTACAGTGACCTGTTGTGTGAGCAATGTGGTTCCGGTGAGCTGTCGGACGAGCTGCTTCTCTGCGACAAATGCGACAGAGGCTTCCACATGAAATGCGTGAGGCCGATTGTCGTGAGAATTCCGATTGGATCGTGGCTTTGTCCTAAGTGTCAGGGAGGGAAGAGAGTGCGGTCTTTCTCGCAAAAGAGGATAATTGATTTCTTCGGGATTCGGAGGAGTTATTTTTATGCTGATGACAAGAGTTCTTCTCAGGATGCAAAGAAGCGTAGGAAACGTTCAAGACCTCTGGTATTACATAAGAGAAAAAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCTCAGAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTAAATATAGAATTCTGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCGAATCGAGCCGAACTGGAAAACGGTGACATGCAGATTCTTTCCAAGGAAGACTTAGAGACCGTAGAACACTGTATTGCTATGTCTAAACGAGGCGAATTCCCTCCCTTTATGGTTGTTTACGATTCGTGTCAAGGGTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACAATTGTTGCTGAATACACTGGCGATGTGGATTACCTTCACAACCGGGAACGTGATGATTGTGATAGCATGATGACCCTTCTTCTTGGAAGAGAAAGTTGTCAAAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATCGCTCGCTTTATAAGTGGCATAAACAATCATACACAGGAAGGTAGGAAGAAACAAAACTGCAAATGTGTGAGATACAATGTTGGTGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGACATTTCTAAGGGAGAAAGGCTTTATTATGATTACAATGGTTACGAGTATCATTACCCGACTCATCATTTTGTCTAA 1143 0.4611 MPPATSSPTAQRHVGFSRRTQAPFQLNDSSSQLHDDSPPAKKYRLMSDIMARAQYAVVERETYSDLLCEQCGSGELSDELLLCDKCDRGFHMKCVRPIVVRIPIGSWLCPKCQGGKRVRSFSQKRIIDFFGIRRSYFYADDKSSSQDAKKRRKRSRPLVLHKRKRRLLPFVPTKDPAQRLKQMGSLASALTALNIEFCDHLTYLPGMAPRSANRAELENGDMQILSKEDLETVEHCIAMSKRGEFPPFMVVYDSCQGYTVEADDLIKDMTIVAEYTGDVDYLHNRERDDCDSMMTLLLGRESCQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVGGECRVFLVATRDISKGERLYYDYNGYEYHYPTHHFV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01091 380 Pfam SET domain 286 368 IPR001214 GO:0005515
Vian4g01091 380 SMART PHD_3 67 113 IPR001965 -
Vian4g01091 380 CDD PHD_RSF1 67 112 - -
Vian4g01091 380 Pfam PHD-finger 68 113 IPR019787 -
Vian4g01091 380 ProSitePatterns Zinc finger PHD-type signature. 68 112 IPR019786 -
Vian4g01091 380 ProSiteProfiles Zinc finger PHD-type profile. 65 115 IPR019787 -
Vian4g01091 380 FunFam Histone-lysine N-methyltransferase ATXR5 151 380 - -
Vian4g01091 380 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 145 378 - -
Vian4g01091 380 SUPERFAMILY SET domain 239 369 IPR046341 -
Vian4g01091 380 CDD SET_ATXR5_6-like 243 380 - -
Vian4g01091 380 Gene3D SET domain 151 380 IPR046341 -
Vian4g01091 380 SUPERFAMILY FYVE/PHD zinc finger 58 117 IPR011011 -
Vian4g01091 380 ProSiteProfiles SET domain profile. 246 368 IPR001214 GO:0005515
Vian4g01091 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 126 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01091 Vian-Chr4 17609297 17612972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01091 63 134 C2H2 Transcription Factor Family AT3G01460 36.111 2.75e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian4g01091 SET 7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01091 4 17609297 17612972 Vian4g01091 4 17609297 17612972 ECH