Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01087 ATGAGAAAACCCACTAAACCCACCCCCACCTTCAACCCATTCTCAATCCTCAGATCCACCCTCCTCCTCCTCCTCCTCCTCTCCATGGCCTCCATCTTCTTCCTCTCCCTCTTCTTCTTCCTCAACCTCCACCCTCACTCCTCCGCCGTGGAGATTAACCGCGCTTGCAATGCAACGCGCTTCCCTATCCAATGCCACGCCTCTCTCGTCCCCAATCTCCTTACCAACCCCACCCCTCTCCAAATCATCCAATTCACCATCAGAGCCTCCTCCTCCAATCTCGTCACCGCGCGATCCATGCTGCACACCATCCGCGACGCCTCCCGAAACAACCGTACCCGCACTTCCAACGTCAAAAACTGTCTCCGTGTCCTCCATTACTCCCGCTACCGCAACTACCTCGCCGCCGTCGCACTCCGCCGTGGCGCCACCAAGGATGCGCGCGCCTGGATGAGCGCCTCCCTCGGCTACCAGTACGGCTGCTGGAACGGCCTCAAGTACATCAACCACACGGCGCAGGTCGCCGAAACGATGACGTTCCTTAACTCTCTCGTCAACATTTCCAGCAACGCTCTCAGCATGGTGGTCTCCTACGACCTCTTCGGAAACGACACCGCATTGTGGAGGCCGCCGATGACCGAGCGTGACGGCTTCTGGGAACCGTCCGGGACTCAGGGACTCGGGGCGGGACCCAAGATACCGGAGAAATTGACGTCGGATGCTGTGGTGTGTAAGGGTGGGGGGTGTTACCAGACGGTGCAGGAAGCGGTTAACGCTGCGCCGAATCATTCGGAAGAGAGATTTGTGATTTATATAAAGGAAGGGGTTTATGAAGAGAAGGTGAGGATTCCATTGAGGAAAAGGAATGTGGTGTTCTTGGGGGATGGCATGGGTAAGACGGTGATCACGGGATCTGCTAACGTGGGCCAGCTCGGTGTCACCACCTACAGCTCTGCCACCGTGGGGGTTGCGGGGGATGGATTTATGGCAAAGGATCTCACGATTCAGAACACGGCTAGTGCTGATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGTGATCTTTCTGTCATTGAGAACTGTGAATTCATAGGCAACCAGGATACTCTCTATGCTCATTCCCTGCGCCAATTTTATAAATCTTGCCGCATACAAGGCAACGTGGACTTCATCTTTGGGAACTCGGCAGCAATCTTCCAAGACTGTGAAATCCTAGTGCGGCCTCGCCAAGGCAGACCAGAAAAGGGTGAGAACAATGCTGTTACTGCACAAGGTAGGACAGACCCTGCTCAGTCAACAGGATTTGTTTTCCAGAACTGTTTGGTTAATGGTACGGAGGAATACATGGCATTGTATTATAGCAAACCTACAGCTCACATAAACTATCTGGGGAGGCCTTGGAAGGAGTATTCTAGAACAGTTTTCATCCATACATTCTTGGAAGCCCTTATCACACCAGAGGGATGGATGCCATGGACTGGGGATTTTGCTCTGAAAACGCTTTATTATGGGGAATTTGAGAACTCAGGACCCGGTTCTAATCTGAGTAAGAGGGTGCCTTGGAGTAACCAGGTCCCATCGGAGCACGTGTTCTCATATTCAGTGCAGAGTTTCATTCAAGGAGATGATTGGAATCATCATTTCAGTCTTTAG 1653 0.5281 MRKPTKPTPTFNPFSILRSTLLLLLLLSMASIFFLSLFFFLNLHPHSSAVEINRACNATRFPIQCHASLVPNLLTNPTPLQIIQFTIRASSSNLVTARSMLHTIRDASRNNRTRTSNVKNCLRVLHYSRYRNYLAAVALRRGATKDARAWMSASLGYQYGCWNGLKYINHTAQVAETMTFLNSLVNISSNALSMVVSYDLFGNDTALWRPPMTERDGFWEPSGTQGLGAGPKIPEKLTSDAVVCKGGGCYQTVQEAVNAAPNHSEERFVIYIKEGVYEEKVRIPLRKRNVVFLGDGMGKTVITGSANVGQLGVTTYSSATVGVAGDGFMAKDLTIQNTASADAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAIFQDCEILVRPRQGRPEKGENNAVTAQGRTDPAQSTGFVFQNCLVNGTEEYMALYYSKPTAHINYLGRPWKEYSRTVFIHTFLEALITPEGWMPWTGDFALKTLYYGEFENSGPGSNLSKRVPWSNQVPSEHVFSYSVQSFIQGDDWNHHFSL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01087 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 197 IPR035513 -
Vian4g01087 550 SUPERFAMILY Pectin lyase-like 241 546 IPR011050 -
Vian4g01087 550 SMART PMEI_2 47 194 IPR006501 GO:0004857
Vian4g01087 550 Pfam Pectinesterase 241 542 IPR000070 GO:0030599|GO:0042545
Vian4g01087 550 NCBIfam pectinesterase inhibitor domain 30 194 IPR006501 GO:0004857
Vian4g01087 550 CDD PMEI-like_3 55 195 - -
Vian4g01087 550 Gene3D - 235 549 IPR012334 -
Vian4g01087 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 195 IPR035513 -
Vian4g01087 550 FunFam Pectinesterase 234 550 - -
Vian4g01087 550 FunFam Probable pectinesterase/pectinesterase inhibitor 51 50 197 - -
Vian4g01087 550 Pfam Plant invertase/pectin methylesterase inhibitor 52 194 IPR006501 GO:0004857
Vian4g01087 550 PANTHER PECTINESTERASE 32 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01087 Vian-Chr4 17531997 17534251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01087 43 544 Carbohydrate Esterase AT5G09760 63.548 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01087 - - gmx:100802102 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01087 4 17531997 17534251 Vian4g01087 4 17531997 17534251 ECH