Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01085 ATGACCACAGATCAACAACACAACATCATCCTCCACGATCATCACCAAATTCCAATGGATGTTGGAATTTGGTCCAATCACCACCACCCTTTTCACCCACAACCCTCTTCCTCCTCTTCAACTAATTTCCTAACCGACGTCTTGGGAATCCAGTTTGAAGAAGACGAAGAGGAAGAGCTCGGAGCGATGAAGGAGATGATGTACCAGATGGCAGCGATGCAACCGGTCGACATAGACCCTGCCACCGTCAGAAAACCCAAGAGGCGAAACGTCCGCATAAGTGATGACCCTCAGAGTGTGGCTGCACGTCATCGAAGAGAGAAGATCAGTGAGAAAATCCGTATCCTTCAAAGACTTGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCAGGTTCCTTCAATCAACACCACAGATTCACTCCGTTAATGCCACTGCTCCCAACTCCGATTGCCCTTTTCCACCAACTACATTGCACGCTTCCACCTCCGTCAACCTGCCTCTTGGAATCCAATTCAACGCCGACCACCTTCAACATTCATCGGGTAATTACTGA 603 0.4859 MTTDQQHNIILHDHHQIPMDVGIWSNHHHPFHPQPSSSSSTNFLTDVLGIQFEEDEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRFLQSTPQIHSVNATAPNSDCPFPPTTLHASTSVNLPLGIQFNADHLQHSSGNY 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01085 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Vian4g01085 200 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 180 IPR045843 GO:0003700|GO:0006355
Vian4g01085 200 Gene3D - 96 161 IPR036638 GO:0046983
Vian4g01085 200 Pfam Helix-loop-helix DNA-binding domain 103 142 IPR011598 GO:0046983
Vian4g01085 200 CDD bHLH_AtIND_like 94 151 - -
Vian4g01085 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 155 IPR036638 GO:0046983
Vian4g01085 200 FunFam BHLH transcription factor 96 160 - -
Vian4g01085 200 SMART finulus 99 148 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01085 Vian-Chr4 17473304 17473906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01085 62 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 79.787 4.78e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian4g01085 HLH 9.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01085 - - var:108331264 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01085 4 17473304 17473906 Vian4g01085 4 17473304 17473906 ECH
Vian1g03655 1 59333513 59334343 Vian4g01085 4 17473304 17473906 PCT