Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01081 ATGAAGATGCAAAAGAGGAGAAACCATCGTCGTATTCATTCCCCTCCTGTGAGATTCGGTTCGCTGTCGTTGTATTCGGTTCCTCCTCCATTATATTCGATTCTTGCTTCATGTATTCGCAAGGAAAAGTGTGTATTCGGTTCCTACCTTCATGCTATTCGATTCCCGCTTCGTGCTCAAGAGCAAGCATATTCGTCCCTCCTTGGGAGGTCTCCTCTTATGGTAGGACTCACCAAAAGGAGCAGGTTCTCTTGCTTGTATCCACTTCCTCTACTTGGTATTCGATTCCTCATTTGCAAGTTTGTGTGTATTCGCAGCGGCTATGGCAGTGGAGTCAAGGGAGGAGGAGCGGCATACAGTGCATGGCATAAGTGGTCGTGGAAGGGAGGAAGTAATCCTGCGGTGGCTGCGGAGGGGGAGGGTGGTTGGATTGGGGATGCTGCGGTGGCATGGGAAGCCGGAAAACCACTGGTGATAGAGGAAATTGAGGTAGCTCCACCACAGGCTAATGAAGTTCGTCTGAAGATCTTGTTCACCTCACTCTGTCATACTGATGTCTACTTCTGGGAAGCCAAGGGACAGACACCTCTATTTCCACGGATATTTGGTCATGAAGCAGGAGGAATCGTGGAAAGTGTTGGTGAGGGCGTGACAGATCTCAAGCCTGGTGATCACGTGCTTCCAGTGTTCACAGGGGAGTGCAAGGAGTGTGATCACTGCAAATCAGAGGAAAGTAACATGTGTGACCTCCTAAGGATTAACACTGACCGTGGAGTGATGCTAAATGATGGCAAGTCAAGGTTTTCAATCAATGGACAACCAATATACCACTTTGTTGGAACCTCCACTTTCAGTGAATACACTGTAGTCCATGTTGACTGTGTTGCCAAGATCAACCCCACTGCCCCACTAGGCAAAGTTTGTGTTCTGAGCTGTGGAATCTCAACAGGTCTTGGTGCTACATTGAATGTTGCAAAACCAAGAAAAGGTTCATCAGTAGCTATATTTGGATTGGGAGCTGTGGTTGCTGTGAGTTGCCTTGCCTCTTCCAAAATGAAAGGAACCTATGCTAAGAAGTTTGGAGTTACTGAGTTTGTGAATCCAAGAGATTATGACAAACCAGTTCAAGAGGTGATTGTTGAAATGACTGACGGGGGAGTGGACCGAAGTGTTGAGTGTACTGGAAGTATCAATGCTATGATCTCAGCATTTGAATGTGTGCACGATGGATGGGGTGTAGCTGTACTAGTTGGTGTGCCAAATAAAGATGATGCTTTCAGAACCCATCCAATCAATGTCCTTAACGAAAAGACGCTCAAGGGTACTTTCTTTGGCAACTATAAACCACGTTCTGATCTCCCAGAAGTGGTCGAGATGTACATAAAAAAGGAACTTGAACTGGAGAAATTTATCACCCATGAAGTACCTTTCTCTGAAATCAACAAAGCCTTTGAATATATGCTCAAAGGGGAGGGCCTGCGTTGCATAATCCGCATGACTGCATAG 1506 0.4628 MKMQKRRNHRRIHSPPVRFGSLSLYSVPPPLYSILASCIRKEKCVFGSYLHAIRFPLRAQEQAYSSLLGRSPLMVGLTKRSRFSCLYPLPLLGIRFLICKFVCIRSGYGSGVKGGGAAYSAWHKWSWKGGSNPAVAAEGEGGWIGDAAVAWEAGKPLVIEEIEVAPPQANEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECDHCKSEESNMCDLLRINTDRGVMLNDGKSRFSINGQPIYHFVGTSTFSEYTVVHVDCVAKINPTAPLGKVCVLSCGISTGLGATLNVAKPRKGSSVAIFGLGAVVAVSCLASSKMKGTYAKKFGVTEFVNPRDYDKPVQEVIVEMTDGGVDRSVECTGSINAMISAFECVHDGWGVAVLVGVPNKDDAFRTHPINVLNEKTLKGTFFGNYKPRSDLPEVVEMYIKKELELEKFITHEVPFSEINKAFEYMLKGEGLRCIIRMTA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01081 501 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 203 217 IPR002328 GO:0008270|GO:0016491
Vian4g01081 501 Pfam Alcohol dehydrogenase GroES-like domain 170 297 IPR013154 -
Vian4g01081 501 Gene3D - 317 442 - -
Vian4g01081 501 PANTHER ALCOHOL DEHYDROGENASE 146 497 - -
Vian4g01081 501 SUPERFAMILY GroES-like 449 498 IPR011032 -
Vian4g01081 501 FunFam alcohol dehydrogenase 1-like isoform X1 153 316 - -
Vian4g01081 501 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 303 463 IPR036291 -
Vian4g01081 501 FunFam S-(hydroxymethyl)glutathione dehydrogenase 317 442 - -
Vian4g01081 501 CDD alcohol_DH_plants 147 498 - -
Vian4g01081 501 Pfam Zinc-binding dehydrogenase 338 459 IPR013149 -
Vian4g01081 501 SUPERFAMILY GroES-like 146 320 IPR011032 -
Vian4g01081 501 Gene3D - 153 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01081 Vian-Chr4 17404128 17411610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01081 144 491 Monolignol Biosynthesis Gene Families AT1G72680 24.251 8.79e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01081 K18857 - gmx:100783318 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01081 4 17404128 17411610 Vian4g01081 4 17404128 17411610 ECH