Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01079 ATGGTCTACTATCCTCTTCTGGAGTGTAATGCCAATATTGATGACCCTAATGACAACTTTTTGGACTTGGAGCCAACATTGCATATGTGTTTTCAGACAATGGAAAAAGCAAAAAATCTTTACACAAACTACGCCATTAGATGTGGATTTGCTATGCGCACAAGAACTTCTAAAAAAGATAACAACAACAATGTCTACTACTTGAGATTAGTTTGCTCAAGGGAAGGGAAATATGTCTCTTCCATCAAACCCGAGGTGAAAACACTTCCTAGTCAAACTAAGCAATGTCGAGTTGGGATATGGTTTATAAGGACCGTTGTTCTAGAGCACAACCATGATCTTTGCCCAAATACCTCGAAGCTAATTCTTGGCAATAGAAAACTAAGCATGCAAGCTAAATACACTTTGGAGGTGAACGATGATGAGGGAGTTCGGATTAATAAGAGTTTCCTTAGCATCGTGAGCGATGCAGGTGGATTTGAAAACATGGACTTCGTCGAGCGAGATGCGCGAAACTACATTGGCTAA 528 0.4015 MVYYPLLECNANIDDPNDNFLDLEPTLHMCFQTMEKAKNLYTNYAIRCGFAMRTRTSKKDNNNNVYYLRLVCSREGKYVSSIKPEVKTLPSQTKQCRVGIWFIRTVVLEHNHDLCPNTSKLILGNRKLSMQAKYTLEVNDDEGVRINKSFLSIVSDAGGFENMDFVERDARNYIG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01079 175 Pfam FAR1 DNA-binding domain 40 115 IPR004330 -
Vian4g01079 175 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 21 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01079 Vian-Chr4 17362419 17363419 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian4g01079 FAR1 1.9e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01079 - - var:108341492 268.47