Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01076 ATGCGAACAAAGATTGAACTGTGCGCGCTTACTTCTTCCACCTTCCCCGGGGTTCACTGCGCAGATGAAGCTTCTTCCGACTGTAAAGGGATCGTCATCCATTGTGTGCCAATATCCCTGCATGATCCGGGGAAGGCTTTGGCAAATTCGACTCCAGGGTTTCGGTTCCGTCCCACCGACGTTGAGTTGATTGAGTTTTTTCTAAAGAGGAAGGTTCGGGGCAAGAAAATTCCTAGCGGAGTAATAGCTGAGCTTGACTTGTACAAGTATGCTCCGTGGGATCTTCCAGATAAATCTGTGCTTCAGAGTGGGGATTTGGAGTGGTACTTCTTTTGCCCGCAGGGGAAGAAGTATTTGAGTGGAGGGAGGTTGAATCGGTCGACGGAGGCTGGGTACTGGAAGACTACTGGGAAGGATAGAGCAGTTGAGCACAAGAATCGAGTTGTGGGGATGATTAAAACTCTGGTTTTTCACACCGGTAAGGCCCCTAAGGGAAATCGGACTGATTGGGTTATGCATGAATTCAGACTCCAGGACAAGGAGATGGTTGACGAAGGCATTTCGCAGGATTCCTATGTAATTTGTAGGATATTCCAAAAGGAAGGTCCTGGCCCTAGGAATGGTGCACAATATGGTAAACCATATGATGAAAAAGACTGGGATACAGATGAGGAAATTGACTCTGTGCAATCTGACCGTGTTGCTTCTGTGTCTACACCTCTTCCCATACAACCCAGTGGACGTCATATTTCTATTGCAAAAGACATCCATCCCTCTACAAGTGGATGTGCTGGATTGACCTCTGAATTATGTGTATCAAAATTGATGCCATCTTGCTCAGCACATCATGCGATTCCCACCAATCAAGCTATCTCTGTATCATGTGTATCGGAATTGATGCCCTCCTGCTCAGCACTATCTTCTCCTAACTGTGCGTTGGGTTCTGTATCACATCTATCAGCAGTTCCTTTTGCTCCAAACTATGATGTTGACTCTGTATCATGTGTATCAAAATTGATGTCCTCTTGCTTGCCACTTGCTTCGGCTCCAAATAATCTAGTTGATGCTTCATCATCTGTACCAGAATTGATGCCCTCTTGCACGGCACGTCCTTCACCTTCATCTCCAAACCATCAAGATGATGATAACATTTTATCTTTGCTAGATTATTTGAAAGAAGATGATGACACAATGGCTGTGAATGAAAACAATGGAATTGAGTTAGCTACTCAGAAATCCCCTTGTTCTTGTAGATATCTATACGAGGTTGATCCTGATCGGGCGAACAATGCTGAATGCGCACCATGTTCGGATCAAAATGTGATTTTTGAGAACTTAGGAGACCTTGACAGCTTGGTTGGATTGGGTGAAGGAAGTTTATCCTCTGGCCAGAAAATTGGACTTTCTACAAGCGATATGTTTTATATAGGTGGTGATGATATGTTCAGGTCTTGGGAATCCCAAGACTTTTTGGAGTTGATGGATCTAGCGGGGCCACAATAA 1503 0.4471 MRTKIELCALTSSTFPGVHCADEASSDCKGIVIHCVPISLHDPGKALANSTPGFRFRPTDVELIEFFLKRKVRGKKIPSGVIAELDLYKYAPWDLPDKSVLQSGDLEWYFFCPQGKKYLSGGRLNRSTEAGYWKTTGKDRAVEHKNRVVGMIKTLVFHTGKAPKGNRTDWVMHEFRLQDKEMVDEGISQDSYVICRIFQKEGPGPRNGAQYGKPYDEKDWDTDEEIDSVQSDRVASVSTPLPIQPSGRHISIAKDIHPSTSGCAGLTSELCVSKLMPSCSAHHAIPTNQAISVSCVSELMPSCSALSSPNCALGSVSHLSAVPFAPNYDVDSVSCVSKLMSSCLPLASAPNNLVDASSSVPELMPSCTARPSPSSPNHQDDDNILSLLDYLKEDDDTMAVNENNGIELATQKSPCSCRYLYEVDPDRANNAECAPCSDQNVIFENLGDLDSLVGLGEGSLSSGQKIGLSTSDMFYIGGDDMFRSWESQDFLELMDLAGPQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01076 500 Gene3D NAC domain 59 202 IPR036093 GO:0003677|GO:0006355
Vian4g01076 500 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 51 287 - -
Vian4g01076 500 Pfam No apical meristem (NAM) protein 52 177 IPR003441 GO:0003677|GO:0006355
Vian4g01076 500 ProSiteProfiles NAC domain profile. 50 200 IPR003441 GO:0003677|GO:0006355
Vian4g01076 500 SUPERFAMILY NAC domain 45 200 IPR036093 GO:0003677|GO:0006355
Vian4g01076 500 FunFam Nac domain-containing protein 86 59 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01076 Vian-Chr4 17257292 17260757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01076 48 277 NAC Transcription Factor Family AT5G64060 52.174 3.27e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian4g01076 NAM 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01076 - - vun:114164401 739.954