Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01072 ATGCCCACTTGGTGGGGTAAAAAGTCCAGCAAGAGCAAGGACCAAGAGGACCACCACCCGCATGGCGGCGGCGGCGGCGGGAGTACCAGCGTTCTTCACTTCAACTTCATCAAGCCCAAGACTAGGCCCAACAAGAGCTTCGACGAAGTTGTCCACGTCCACAATTCCCCACGCGCTAGCCGCGATTTAGCTCCCTCCGCCGCCGACTCCGACGAGAAGCGGGGGCTCCCCTTGCCTCGCCCCTCTGTCTCTTCCACGCAAAGCTTCAGCATCGACCAGGGCCTCGTCTTCGGATCTGCCTCCGTTTCAGGCTCTAGCGTCAGCTCCAGTGGCTCCTACGAGGACCATCCCTCATATCACGCTCAGATTACTGGTGCTAGAGCGCAAGGTGACGTGAAGTTCCATGTGAGGTCTAAAAGCCCAGGTCCTGGGTCAAGAGGGCCCACCAGCCCAACATCACCTCTTCATCCGAAGTTGCCTATTTTGAGCCTTGACTCTCCTACAGGCAGACAAGAAGACGGAAGGGGTGAATGCCATCCATTGCCTCTTCCACCGGGCTCTCCTACTAGCCCTTCTTCTTCTCTTTCCAGCGCTAGAGCAAATGGGGTGGCAGAACACACTACCAGTAACCTTTCAAAGTGGAAGAAGGGAAAGCTTCTAGGACGGGGAACTTTTGGGCATGTTTACCTGGGATTCAATAGTAATAGTGGACAATTGTGTGCAATAAAGGAAGTCAGGGTTGTCTGTGATGACCAAACGTCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATCAATTTGCTCAGTCAGCTTTCACATTCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAACACTCTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCACAAATTACTTCAGGAATATGGGGCCTTCAAAGAGCCTGTTATTCAAAATTATACCAGGCAAATTGTCTCTGGTCTTTGCTATCTTCATGGGAGAAATACAGTGCATAGGGATATCAAGGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCCAAACATATAAATTCTTCTTCCTCCATGCTTTCTTTCAAAGGGAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGCCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCCTGGAATCAATATGAAGGGGTAGCGGCAATATTTAAAATCGGTAACAGTAGAGATATGCCTGAAATCCCTGATCATCTCTCTAGCGATGCAAAGAATTTCATTCAGCAATGCTTACAAAGAGATCCATCGGCCCGCCCCACAGCCCAGGAGTTACTAGATCACGCCTTCATTCGAGATCAACCAGCAACAAAAGCTACAAATGTCAGAATAACTAGGGATGCTTTCCCCTGCAGTTTTGATGGAAGTCGGACACCGCCGCCAGTTTTAGATCATTCCAATAGAACGAGTATAAATTCATTGGATGGAGAATATGGAACAAAGCCAGTTCCTGTTACTTCACGTGCAGTAAGGAGCCCAAGAGATAACACAAGGGTGATCACATCTTTACCAGTATCGCCCTGCTCAAGTCCATTGAGACAGTATGGGCCAGCCCACAAGAGCTGTTTTCTTTCTCCTCCTCATCCAACTTACACTTTGATGGGGCAAAATACCCTCCCTTCATATCCAGTGAGATCAAATGCAACATTCACTCTTGATCCTTTTCATGAAAAATCTTTTTACAAAGCCCACACACCGGGTGGATCCCCTAGAAGATTCATTTGA 1842 0.4761 MPTWWGKKSSKSKDQEDHHPHGGGGGGSTSVLHFNFIKPKTRPNKSFDEVVHVHNSPRASRDLAPSAADSDEKRGLPLPRPSVSSTQSFSIDQGLVFGSASVSGSSVSSSGSYEDHPSYHAQITGARAQGDVKFHVRSKSPGPGSRGPTSPTSPLHPKLPILSLDSPTGRQEDGRGECHPLPLPPGSPTSPSSSLSSARANGVAEHTTSNLSKWKKGKLLGRGTFGHVYLGFNSNSGQLCAIKEVRVVCDDQTSKECLKQLNQEINLLSQLSHSNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLCYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSRDMPEIPDHLSSDAKNFIQQCLQRDPSARPTAQELLDHAFIRDQPATKATNVRITRDAFPCSFDGSRTPPPVLDHSNRTSINSLDGEYGTKPVPVTSRAVRSPRDNTRVITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTLMGQNTLPSYPVRSNATFTLDPFHEKSFYKAHTPGGSPRRFI 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01072 613 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 66 478 - -
Vian4g01072 613 MobiDBLite consensus disorder prediction 190 209 - -
Vian4g01072 613 ProSitePatterns Protein kinases ATP-binding region signature. 220 243 IPR017441 GO:0005524
Vian4g01072 613 MobiDBLite consensus disorder prediction 501 515 - -
Vian4g01072 613 SMART serkin_6 214 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01072 613 MobiDBLite consensus disorder prediction 1 87 - -
Vian4g01072 613 FunFam Mitogen-activated protein kinase kinase kinase 212 494 - -
Vian4g01072 613 CDD STKc_MEKK1_plant 213 470 - -
Vian4g01072 613 ProSiteProfiles Protein kinase domain profile. 214 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01072 613 SUPERFAMILY Protein kinase-like (PK-like) 211 538 IPR011009 -
Vian4g01072 613 MobiDBLite consensus disorder prediction 135 209 - -
Vian4g01072 613 MobiDBLite consensus disorder prediction 42 56 - -
Vian4g01072 613 MobiDBLite consensus disorder prediction 494 520 - -
Vian4g01072 613 Pfam Protein kinase domain 215 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01072 613 Gene3D Transferase(Phosphotransferase) domain 1 211 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01072 Vian-Chr4 17111566 17117681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01072 1 533 MAP Kinase Kinase Kinase AT1G53570 57.014 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian4g01072 Pkinase 3.7e-73 CL0016