Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01070 ATGAATTTCCCATATCTTACTAGCTTCTCCGAACGTGTCGTTGCTCCTCTTCATGCCACAGTTCCCACTACAATTATCAGGGGCAATAAGGCGGAGAGTTTTGCAATTGAAGGGCGTAATCTGAGATTCTCATTCACGACGAGGCAAACGCAAGATGTGCCTGTTCTTAGGGATTGTTCGATTCGCATTCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGACCCCAACTTCAGGAACAGTGAATGTGAATGAACCTAAAAGTTTCGTTTTCCAAAATCCAGATCATCAGGTGGTGCTGCCTACTGTAGATGCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGACTCACGATGAAGTCAGGTCTAGGGTGTCGAGAGCTTTGCGTGCTGTAGGGCTGACTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGTAAAGTTCTGTTGTTAGATGAGCTCACCACATTCTTAGATGAAACTGACCAGGTCGGGGTTATCAAAGCTGTCAGGAACTCTGTGGATACCTCTGCAGAAGTTACGGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAATATGCAGATGGTGCCATCTACATGGAGGATGGAAAAGTTGTCATGCATGGAGATGCAGCTAGCATTAGGAGTTTCATTGAAGCCAGACAATCTGCTTATATAAACCAGATCAATTCTTAA 798 0.4536 MNFPYLTSFSERVVAPLHATVPTTIIRGNKAESFAIEGRNLRFSFTTRQTQDVPVLRDCSIRIPCGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVNVNEPKSFVFQNPDHQVVLPTVDADVAFGLGKINLTHDEVRSRVSRALRAVGLTDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNSVDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYINQINS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01070 265 CDD ABC_cobalt_CbiO_domain1 37 238 IPR015856 GO:0005524|GO:0016020|GO:0055085
Vian4g01070 265 FunFam ABC transporter I family member 10 32 262 - -
Vian4g01070 265 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524|GO:0016887
Vian4g01070 265 SMART AAA_5 65 238 IPR003593 GO:0016887
Vian4g01070 265 Pfam ABC transporter 56 188 IPR003439 GO:0005524
Vian4g01070 265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 261 IPR003439 GO:0005524
Vian4g01070 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 253 IPR027417 -
Vian4g01070 265 Gene3D - 31 264 IPR027417 -
Vian4g01070 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 36 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01070 Vian-Chr4 17103811 17107113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01070 36 243 Calmodulin-binding Proteins AT2G36910 29.646 1.17e-20 89.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01070 4 17103811 17107113 Vian4g01070 4 17103811 17107113 ECH