Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01052 ATGGAGGGAGAAAGAAGGAAGAGAAAAATAGAAAATGAAGAAGAAAACGAGGAGCAGAAAATTGAAAGGTTCTTTGCCTTGATAAAGAGGACAAAAGATGTTCGGGATCGATTCTACAAGGAGACTAAGCAAATGGATGGAGAAAGGGAAAGAAGTATCTGGAACCCAAAGTTTGAAGTTGAAGACTTCATTGATTCTGGAGAAAAAATGCCGGAGACTGGTAAAGTTTCAGGTTCTCATCATCATGATCTTGCAGGTCCTTCACACAAAGAGCTCGTACTCGAAAAGAAAGAAGATTTGCAAGATGCAACACGATTGAGTCACATAGCAAAGCAGAGCCAACAACATTCACCAACAAAATCAACCACAACAGCAGCAACCCAAGAAGCTCGCAAATCAGAAGATCGTTCGGTTAACGAAACAACACACAAGCGAGAAGACAAAAAGCGAATGAAGGGTGAATTAGAGTTGCCACCAGGGTTCAGGTTTCACCCCACGGATGATGAGTTGGTGAACCATTATCTTTGCAGGAAATGCGCTGGTCAACCAATTGCTGCTCCTATCATCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATCGGATTTTACGGCGAGAAAGAATGGTACTTTTTTTCTCCTCGGGACCGCAAATACCCCAACGGCTCACGGCCGAATCGGGCCGCCGGAAGTGGGTATTGGAAGGCCACCGGCGCCGATAAACCGATCGGGAAGCCGAAGGCGCTTGGGATAAAGAAAGCTCTGGTTTTTTACTCTGGAAAAGCCCCCAAAGGAGAGAAAACCAATTGGATCATGCACGAATATCGGCTGGCCAATGTTGACCGATCAGCCTCCAAGAAAAATAACAATCTGAGGCTTGACGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACACGGGGGCAGCGAAATCGGAGACTGAGGTGGTTTATAATTTCGAACACGAGACGAAGCCGGTGATTGAGAAGCTTGGGAACGAGCAATTGTTTATGGATAGTTCAGATTCGATGCAGAGGTTGCAGAGTGAGTCGAGCGGTTCAGAGCAGGTGGTTTCGCCGGACGTGAGGTGGGAGAGAGAGGTGCAGAGCCACCCGAAATGGAATGACATAGGCCTACAGCTTGAAAACGCGTTTGATTTTCAATACAATTACTTTGACGGCAATAACCTTTCGGTTGATGATCCTTTTGGGAGTGTTGAGTACCAAATGGGCCACGTCTCCCCCTTGCAGGATTTGCTCATGGAAGCCCTATTGATGTGA 1311 0.46 MEGERRKRKIENEEENEEQKIERFFALIKRTKDVRDRFYKETKQMDGERERSIWNPKFEVEDFIDSGEKMPETGKVSGSHHHDLAGPSHKELVLEKKEDLQDATRLSHIAKQSQQHSPTKSTTTAATQEARKSEDRSVNETTHKREDKKRMKGELELPPGFRFHPTDDELVNHYLCRKCAGQPIAAPIIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYSGKAPKGEKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNTGAAKSETEVVYNFEHETKPVIEKLGNEQLFMDSSDSMQRLQSESSGSEQVVSPDVRWEREVQSHPKWNDIGLQLENAFDFQYNYFDGNNLSVDDPFGSVEYQMGHVSPLQDLLMEALLM 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01052 436 FunFam NAC transcription factor 166 312 - -
Vian4g01052 436 Coils Coil 7 27 - -
Vian4g01052 436 Pfam No apical meristem (NAM) protein 158 281 IPR003441 GO:0003677|GO:0006355
Vian4g01052 436 Pfam NPR1 interacting 13 116 IPR031425 GO:0010112
Vian4g01052 436 Gene3D NAC domain 166 313 IPR036093 GO:0003677|GO:0006355
Vian4g01052 436 PANTHER NAC TRANSCRIPTION FACTOR 56 157 348 - -
Vian4g01052 436 MobiDBLite consensus disorder prediction 129 160 - -
Vian4g01052 436 MobiDBLite consensus disorder prediction 108 128 - -
Vian4g01052 436 MobiDBLite consensus disorder prediction 108 160 - -
Vian4g01052 436 SUPERFAMILY NAC domain 151 308 IPR036093 GO:0003677|GO:0006355
Vian4g01052 436 ProSiteProfiles NAC domain profile. 157 308 IPR003441 GO:0003677|GO:0006355
Vian4g01052 436 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01052 Vian-Chr4 16547422 16550558 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01052 151 431 NAC Transcription Factor Family AT1G01720 60.884 7.19e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian4g01052 NAM 7.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01052 - - gmx:100814504 498.434