Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01041 ATGCCTTTCAACAAAACCCTTTTTCCTCAACGCTGCGAAGCAAAGGGAAAAACAGCGAAGATGAAAGATTCAGCGGAAACAGATCCTATTGCTGAGTCTCTCAACCTACTGAGTACACTCCTGGACTCCGAACTACCCAGCATCACAAACTTCAAAGGGAAATGGTCACTTGCCCGAGTCAAACTCACCCATCTCCAAACTCATCTCACCGATTTCTCCGCCGAGTTCCCCTACGCCTCCACCACCAACCCCCTCTCCCTCCACCTCCTCCACTCGATCTCCCACACACTCAACGACGCCGTTTTACTCTCCCGCACTTGCCAGCCCCAAGACCTCCTTAACGGCAAGCTCAAAACCCAAAGCGACCTCGACTCCCTCCTGGCCACCCTCGACCGCCACGTCACCGACTGCGACATCCTCTTCCGCAGCGGCCTTCTCATTGAAAGCGCCGCCGTTTCCACCTCCAAAAGAGAAGCTATCCGCTCCGCATCACGAAACCTAATCACCCGGTTGCAAATCGGGTCGCCCGAGTCCAAAACTTCCGCGATGGACTCTCTATTGGACCTCCTTAATGAAGATGACAAAAATGTTACCATTGCTGTGGCCCAGGGCGTCGTTCCCGTACTCGTGCGCCTACTTGATTCACCCTCCGACATGAAGGAGAAAATAGTCGCTGCCATCTCCAAAGTATCCACAGTTGAAAGTGCCAAGACTGTGCTCCTCGCAGAGGGTTTACTTCTTCTCAACCACCTTCTCCGAGTACTTGATTCTGGAAGCGGATTCGCGATTGAGAAATCAAGCATCGCGCTTCAAGCACTGAGTCTTACCAAGGACAACGCCAGAGCGATTGGCTCGCGCGGCGGAATCTCGTCTCTGCTGGAGATTTGCCAGGCTGGCACCCCTGGCGCGCAGGCCTCCGCAGCCGCCGTGTTGCGCAACCTCGCCGCGTTCGCGGAAATTAGGGACAATTTCGCGGAGGAGAATGCTGTGGTGGTTTTAGTCGCCTTGGCTTCCTCCGGGACTGCTTCGGCGCGTGAGAACGCGATTGGGTGTTTGTCGAATTTGATTTCCGAGGCTGACTCGGACGGTTTGTCGAATTTGAGGGTTATGGTGGTTAAAGAAGGGGGGATTGAGTGTTTGAAGAATTACTGGGACTCGGGTACTCCAATTCCGAGTCTTGAAGTTGCAGTGACGATGTTGCGGCATTTGGCTGAGAGTGCTGCAATTGGGGAGGTGCTGATAGGTGAAGGGTTTGTTCGGAGGCTTGTGGGGGTGCTGAACTGTGAGGTGCTGGCGATGAGGGTTGCCGCCGCGAGGGCGGTTCACGCTATAGGGTTGAACAGTGGCAGGGCAAGGAAGGAGATGGGCGAATTGGGGTGCGTTTTTACTTTGATTAAGATGTTGGATGGCAAAGGTGTAGAGGAGAAAGAGGTTTCTGCAATGGCATTGTCGGTCCTGCTGATGCACCCTGCGAATAGGAGGGTTTTCCGCAAGGATGAAAGAGGGGTTGTTAGTGCTGTTCATTTGTTGAACCCTTCGTTGCAAGGGTTGGATAAGAAGTACCCTGTTTCGTTGCTCGCTTCGTTAGTGCATTCCAAGAGTTGCAGAAAGCAGATGGTAGCAGCAGGGGCTTGTGTATATATGCAGAAGCTTGTCGAGATGGATGTGCCGGGATCAAAGAAACTCTTGGAGAGTCTCGGGCGTGGTAAGATTTGGGGTGTTTTTTCTAGACCCTAG 1737 0.532 MPFNKTLFPQRCEAKGKTAKMKDSAETDPIAESLNLLSTLLDSELPSITNFKGKWSLARVKLTHLQTHLTDFSAEFPYASTTNPLSLHLLHSISHTLNDAVLLSRTCQPQDLLNGKLKTQSDLDSLLATLDRHVTDCDILFRSGLLIESAAVSTSKREAIRSASRNLITRLQIGSPESKTSAMDSLLDLLNEDDKNVTIAVAQGVVPVLVRLLDSPSDMKEKIVAAISKVSTVESAKTVLLAEGLLLLNHLLRVLDSGSGFAIEKSSIALQALSLTKDNARAIGSRGGISSLLEICQAGTPGAQASAAAVLRNLAAFAEIRDNFAEENAVVVLVALASSGTASARENAIGCLSNLISEADSDGLSNLRVMVVKEGGIECLKNYWDSGTPIPSLEVAVTMLRHLAESAAIGEVLIGEGFVRRLVGVLNCEVLAMRVAAARAVHAIGLNSGRARKEMGELGCVFTLIKMLDGKGVEEKEVSAMALSVLLMHPANRRVFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLASLVHSKSCRKQMVAAGACVYMQKLVEMDVPGSKKLLESLGRGKIWGVFSRP 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01041 578 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 204 245 IPR000225 GO:0005515
Vian4g01041 578 SMART arm_5 317 357 IPR000225 GO:0005515
Vian4g01041 578 SMART arm_5 447 488 IPR000225 GO:0005515
Vian4g01041 578 SMART arm_5 276 316 IPR000225 GO:0005515
Vian4g01041 578 SMART arm_5 193 232 IPR000225 GO:0005515
Vian4g01041 578 Gene3D - 146 254 IPR011989 -
Vian4g01041 578 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 28 576 - -
Vian4g01041 578 Gene3D - 391 565 IPR011989 -
Vian4g01041 578 Gene3D - 255 390 IPR011989 -
Vian4g01041 578 SUPERFAMILY ARM repeat 166 504 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01041 Vian-Chr4 16394419 16396155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01041 162 341 U-box Gene Family AT1G23030 28.177 1.09e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01041 - - vum:124844092 1023.85