Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01039 ATGGGTTGCGTGCTCGGGACGCCGGCGCGTGCCGGAGTTCAGCGCCGTCGCCGGAGGGAGCAGCGGGAAGTTGCTACCGGAGAAGTTAATAATGCCGTTAGGGTTCGAGATAAGGAAAGGCACCTGCATACCGGCGATTTTCCGGGGACTCTTCCGGCGCTGGAGCGCCGGAAACCTATACTCGACCCGTGCGCTGTCACGCAGCAGGGATGGCCGTCGTGGTTGATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGTCGAGCCAACACTTTCGAGAAGCTTGCTAAGATTGGACAAGGGACCTATAGTAACGTGTATAAGGCTAGGGACCTTGTTACGGGGAAGATTGTGGCATTGAAGAAAGTGAGATTTGATAATTTGGAGCCGGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTGGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTTTATATTTAGTGTTTGAGTATATGGAGCATGATCTCGCAGGGCTTGCGGCTGGCCAAGGGGTCAAGTTCACTGAACCTCAGGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTGTTGCACCGTGATATCAAGGGTTCCAACCTGCTTATAGACAATGAAGGAATCCTTAGAATTGCAGATTTTGGACTGGCAACTTTTTTTGATCCCAAGATAAAACAGGCAATGACAAGTAGAGTGGTGACCCTTTGGTATCGTCCTCCCGAGCTTCTTCTTGGAGCTACATTATATGGTGTGGGTATTGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTTCTGGAAAGCCAATAATGCCTGGCCGAACAGAGTACCCACCAGTAGTTTGTAATCCATCTTGCTCCTTTCCCAGAGTTGCTTTTGAGGCTTTGTGTACAGGAAGCATCTTTCTTTACTGGAAAATTTATTGGGAAGTTCTCTTAGACACACCCAAGTTGGAGAAAGATAGAGGGTTTGCGTTTGACAATCCTGATGACCGTGGAACTGCCTCAGGAGCACTGAATAGTGAATTCTTTACCACAGAGCCCTATGCTTGTGAACCATCGAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAGCTGAGAGATGAAGAAGCAAGAAGGCAAAAGGCTCTAAGTGGAAAAGCTAGTACAGTTGATGGTGTCAAAAGAGGCAGAGCACGCGAGCGTGGTCGGGCCGTTCCTGCCCCTGAAGCAAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTAACGCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCTCCTCCTCATCAAGATGGAGCAGTTGGATATCTACAGGATGCATCAAATAAAGGGCCAGTTTCGCTTGGCCCCGACACCTCGTTTTCCTCAGGGATATTTAATTCAAAACCTTCTGGACCCGTTAGAAGTCATGCTGGTGCAGGACATCACAGAGGGAGGAAAGCCAAAAAAGAAGAGTCCCAGATGGCGTCATCATGGAAATTCATTCGTCCATTCAAGCCATCAACAGTTGGACTTTCTATGGATTTGTTATTTAGGAGCAAATAA 1641 0.482 MGCVLGTPARAGVQRRRRREQREVATGEVNNAVRVRDKERHLHTGDFPGTLPALERRKPILDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILRIADFGLATFFDPKIKQAMTSRVVTLWYRPPELLLGATLYGVGIDLWSAGCILAELLSGKPIMPGRTEYPPVVCNPSCSFPRVAFEALCTGSIFLYWKIYWEVLLDTPKLEKDRGFAFDNPDDRGTASGALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALSGKASTVDGVKRGRARERGRAVPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYLQDASNKGPVSLGPDTSFSSGIFNSKPSGPVRSHAGAGHHRGRKAKKEESQMASSWKFIRPFKPSTVGLSMDLLFRSK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01039 546 PANTHER CELL DIVISION PROTEIN KINASE 92 372 - -
Vian4g01039 546 MobiDBLite consensus disorder prediction 398 430 - -
Vian4g01039 546 SMART serkin_6 94 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01039 546 SUPERFAMILY Protein kinase-like (PK-like) 88 373 IPR011009 -
Vian4g01039 546 MobiDBLite consensus disorder prediction 450 522 - -
Vian4g01039 546 ProSiteProfiles Protein kinase domain profile. 94 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01039 546 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Vian4g01039 546 Pfam Protein kinase domain 94 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01039 546 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Vian4g01039 546 MobiDBLite consensus disorder prediction 477 495 - -
Vian4g01039 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vian4g01039 546 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Vian4g01039 546 Gene3D Transferase(Phosphotransferase) domain 1 177 408 - -
Vian4g01039 546 MobiDBLite consensus disorder prediction 413 427 - -
Vian4g01039 546 FunFam Mitogen-activated protein kinase 175 304 - -
Vian4g01039 546 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01039 Vian-Chr4 16352472 16356313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01039 86 402 Core Cell Cycle Gene Families AT5G10270 44.928 1.08e-88 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian4g01039 Pkinase 4.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01039 K08819 - gmx:100807756 893.649