Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01031 ATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTCGCTCAGGTCACCTTGCTTCCGGAGCCAAATCAAAATGAGAATGACGTGGAGAAAGAACCGCCACTGCCCCCGCCACCGCGGTTTCACGTTCATTCTTTCTGTAAAACCCTGACAGCGTCCGATACCAGTACCCATGGTGGGTTTTCCGTGCTGAGACGGCATGCTGATGAATGCCTTCCCCCTCTGGATATGTCGAAGCAGCCACCCACTCAGGAATTGGCAGCTAAGGATCTTCATGGAAACGAATGGCGATTTAAACACATCTTTCGGGGTCAGCCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAAAGGCTTGTCGCTGGGGATGCGTTTATATTTCTTAGAGGTGAAAACGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAACAGGGTAATGTTCCATCCTCAGTGATCTCAAGTCATAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACAATGTTCACTGTGTATTACAAGCCTAGGACTAGTCCCGCTGAATTTATTGTTCCGTATGATCAATATATGGAGTCTCTCAAAAACAGTTATAGCATCGGGATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACAATTGTTGGAATTGAAGATTCTGATCCCAAGAGGTGGAGAGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACCCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCACTTGCGCCTCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAGTTCCTTCTTCCCCAGATTCTTCTGTCCTTACTCGAGAAGCATCATCTAAAGTAAGCGTCGACCCTTCACCGGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTGGGTGAAAGCAATGACTCTGATGCTGCTGAGAAATCTGTTGTTTGGCCGCCTGCCGCTTTAGATGATGAAAAGATTGATGCTTCTACGTCAAGGAGGTACGGGACGGAGAGCTGGATGTCAATGGGGAGGAACGAGCCAACATATTCTGATCTTCTTTCAAGTTTTGGGGCCGGTGGGGATCTTTCTCATTCATCCTTGATGGATCAAATCAGCCCGGTAGTTTATCCCACTAGAAAGCAATCGTCAGATCATGAAGGCAAACTTCACATGCCTCAGCCGTGGCCTGTAATGCCCTCTAGTCTTTCATTGAATATATTGGACTCCAATACGAAAGTTCCTGCACATGGTGGTGATCCAACTTACCAAGCACGAGTGAATTTGAGGTACAGTGCATTTGGTGAATACCCTTCACTGCATCATAAAGTAGAACACTCACATGGAAAATTGATGCCACCCCCACCTGCACCCCTAAATCAATATCAGACTCCTTGTTCAAGAGAAGTTATGTCAAAACCAGTGTCAACAAAAACATTTGAGGCTGTGAAGTCAAAAAATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTGTTGTACCAGAGCCTTCTGTATCGCAAAGAAATGTCAACGAACCCACTGGTCAGATGCATCTTACGCCACACCAACAAAGAACATCCGAAAATGATGAGAAGTCAGACCACTCAAAGGGCTCAAAAACTGGTGATGATCTAATTGTTGATGACCATGATAGACCATTACAGACTTCTCAGCTACATGTGAAAGATGGTCAAGCTAAACCCCACAGTAGTTCCGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTCGGTAGGTCAGTGGACCTTACGAAGTACACTGGCTATGATGAATTAGTGACTGAATTGGATCAGCTGTTTGAATTTGAGGGAGAGTTATTGTCAACTAAAAAGGATTGGCTTATTGTCTATACTGATAACGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAATTTTGTGCCATGGTTCGCAAAATTTACATCTACCCTAAGGAGGAGATCCAGAAAATGAGCCCGGGTACCTTGAGCTCAAAAAATGAGGAGAACCTGTCGGGTAGTGAAGGTGCAGATGCGAAAGATGTTAAACGTCTGCCGCTTCAAAAGTTCAATTATGAATATTGCCTTGACGCGTGA 2286 0.4663 MPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQNENDVEKEPPLPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNSYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPDSSVLTREASSKVSVDPSPANGFPRVLQGQEFSTLRGNLGESNDSDAAEKSVVWPPAALDDEKIDASTSRRYGTESWMSMGRNEPTYSDLLSSFGAGGDLSHSSLMDQISPVVYPTRKQSSDHEGKLHMPQPWPVMPSSLSLNILDSNTKVPAHGGDPTYQARVNLRYSAFGEYPSLHHKVEHSHGKLMPPPPAPLNQYQTPCSREVMSKPVSTKTFEAVKSKNGDCKLFGFSLISGPVVPEPSVSQRNVNEPTGQMHLTPHQQRTSENDEKSDHSKGSKTGDDLIVDDHDRPLQTSQLHVKDGQAKPHSSSARSCTKVHKKGIALGRSVDLTKYTGYDELVTELDQLFEFEGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENLSGSEGADAKDVKRLPLQKFNYEYCLDA 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01031 761 Gene3D - 59 164 IPR015300 -
Vian4g01031 761 Pfam Auxin response factor 188 270 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian4g01031 761 ProSiteProfiles B3 DNA-binding domain profile. 62 164 IPR003340 GO:0003677
Vian4g01031 761 MobiDBLite consensus disorder prediction 559 582 - -
Vian4g01031 761 Gene3D - 628 722 - -
Vian4g01031 761 FunFam Auxin response factor 628 722 - -
Vian4g01031 761 MobiDBLite consensus disorder prediction 722 741 - -
Vian4g01031 761 Pfam AUX/IAA family 623 720 IPR033389 -
Vian4g01031 761 Gene3D - 225 295 - -
Vian4g01031 761 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 722 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian4g01031 761 MobiDBLite consensus disorder prediction 314 336 - -
Vian4g01031 761 MobiDBLite consensus disorder prediction 559 608 - -
Vian4g01031 761 Pfam B3 DNA binding domain 62 163 IPR003340 GO:0003677
Vian4g01031 761 SMART B3_2 62 164 IPR003340 GO:0003677
Vian4g01031 761 FunFam Auxin response factor 225 297 - -
Vian4g01031 761 SUPERFAMILY CAD & PB1 domains 634 710 - -
Vian4g01031 761 ProSiteProfiles PB1 domain profile. 633 715 IPR000270 GO:0005515
Vian4g01031 761 CDD B3_DNA 60 162 IPR003340 GO:0003677
Vian4g01031 761 SUPERFAMILY DNA-binding pseudobarrel domain 58 191 IPR015300 -
Vian4g01031 761 MobiDBLite consensus disorder prediction 583 608 - -
Vian4g01031 761 FunFam Auxin response factor 60 164 - -
Vian4g01031 761 MobiDBLite consensus disorder prediction 277 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01031 Vian-Chr4 16032251 16035865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01031 1 746 B3 DNA Binding Superfamily AT5G62000 66.184 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian4g01031 AUX_IAA 1.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01031 - - gmx:100803498 1361.28