Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01005 ATGGGATTTCCAAAGGCACGGGCAACCAGAGCACTTCATTGTTCTGGTAATACCAGCTTAGCGGATGCTATAAATTGGATAGTTGATCATGAGAATGACATTGATATTGATGAGATGCCATTGGTAGATGTAGATGTTGAGGTAGAGTCAACTGAGTCCTTCCCCATCTCAGAAGAAATCAGAATCAAAGCACAAAGTTTAAGGGAACAAGAACGTAAGAGGATAGAGCAGGAAGAGAAAAGATTGGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAGAGACTCCTTGAAGCAAAGCGAGTTGCTGAAGAAAATGAAAGACAACGGAATTTATCCCTGAGAAAAGCGGAAAAAGAAGAAGAGAAAAGAGCTAGAGAGAAAGTTCTACAGAAACTAGAGCAGGATAAGTTAAATAGAAAATTTAAACAAGGATTGCCTTTAGAAGGCCAAGGAACCATCAAATCATCTGCTACTAAACTACAAAAGGAAAAGAAGTTAAATCCAGTTTATACAACTACAAAAACTGAGCAGTTAAGAGAATGTCTGAGGAATCTGAAGCGTAACCATCAGGGTGAGGATGCAAGAGTCAGAAGAGCCTTTCAAACACTACTAATCTATGTTGGAAATGTTGCCAAGAATCCCAAGGAGGAAAAGTACAGGAAAATACGACTGAATAATCCATTATTCCTGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAGCTATGTGGTTTTGAGAGAACTGGTGACTTCTTGCATCTTTCTCAAGAAAAGGTTGACATGGCACTGCTGAATTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAACCCTTTCTTTGGAGTTCTAAGCACTACTCACAATTAA 882 0.3923 MGFPKARATRALHCSGNTSLADAINWIVDHENDIDIDEMPLVDVDVEVESTESFPISEEIRIKAQSLREQERKRIEQEEKRLEREREKERIQAGKRLLEAKRVAEENERQRNLSLRKAEKEEEKRAREKVLQKLEQDKLNRKFKQGLPLEGQGTIKSSATKLQKEKKLNPVYTTTKTEQLRECLRNLKRNHQGEDARVRRAFQTLLIYVGNVAKNPKEEKYRKIRLNNPLFLDRVGSLNGGVEFLELCGFERTGDFLHLSQEKVDMALLNSAGFVLNSAMTNPFFGVLSTTHN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01005 293 PANTHER F13M7.16 PROTEIN 1 288 - -
Vian4g01005 293 CDD PUB_UBA_plant 184 288 - -
Vian4g01005 293 Pfam PUB domain 197 265 IPR018997 -
Vian4g01005 293 Coils Coil 103 140 - -
Vian4g01005 293 Gene3D - 1 37 - -
Vian4g01005 293 SMART PGNneu 200 261 - -
Vian4g01005 293 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 30 IPR015940 -
Vian4g01005 293 Coils Coil 61 92 - -
Vian4g01005 293 Gene3D - 175 278 - -
Vian4g01005 293 SUPERFAMILY UBA-like 1 41 IPR009060 GO:0005515
Vian4g01005 293 SUPERFAMILY PUG domain-like 171 284 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01005 Vian-Chr4 15298683 15316223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01005 1 288 C2H2 Transcription Factor Family AT1G04850 61.644 8.10e-95 281