Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00999 ATGGCCACCCAAAACCAAACACACTCTCTTCCAAACACCACTATCGACCCAAACACCGGTTTCTGTTCTTCTTCTAAAATCTTCCACAGCCTCCGTCCAAACGTCCAACTCCCTCCGCTGTCTCAGCCGCTCTCCCTCACCGATTACGCCCTCTCCCTTCTCCCCGCCGCCGCCACCGCCACTGAAAACTCCGCCCTCATCGATGCCTCCACCGGCCGTCAGCTCTCCTACTCCCTCTTCCTCTGCCAAGTAAAATCCCTCGCCTCCTCCATCCAATCTCTCACCCCTCTCTCCAAAGGCCACGTGGCACTAATCCTCATTCCAACCTCCCTGCACGTCCCCGTACTCTACTTCTCACTCCTCTCGCTAGGCGTCACAGTCGCACCTGCCAACCCGCTCAGTACCGCTTCCGAGTTGACTCACCTCGTCCGACTCACAAAACCCGCCATCGCCTTCGCCACCTCCGCCGTCGCCTCAAACATCCCCGCCCTCAAATTCGGCACTGTTCTCACCGACTCCCCGCTCTTCCTCTCCATGCTCGACGCCAACGTAGACTCACACTCACGCGCTCCCGGAGTCGAAGTGAGTCAGTCCGAATCCGCTGCAATTCTCTTCTCATCGGGCACCACCGGGCGCGTGAAGGGCGTGTTTCTCACCCACCGGAACTTCATCGCACTCATATCCGGGTACTATCACCTGAGGAACAACCAGCTAGCAGCCGGCGAAGCGGAGACGCAACCCGTGTCACTGATCACGCTGCCGCTGTTCCACGTGTTCGGGTTCTTCATGCTGGTCAGATCCATCGCTTTGGGGGAGACGCTCGTTCTGATGCAGAGATTCGATTTCGAAGGGATGCTCAAAACTGTGGAGAGGTATAAAATCTCAATGATGCCGGTGTCGCCGCCGCTCGTGGTGGCCCTCGCCAAATCGGAGCTCGTGAACAAGTACGACATCAGCTCGCTCCGGATGCTAGGTTGCGGCGGCGCTCCACTCGGCGAGCAGGTCGCCAGTGACTTCAAAGCCAAATTCCCCAACGTGGAAATTTCCCAGGTCCCACTTTTGGAGATAGCCAAACCTGGCTATGGTCTGACCGAAAGTGGAGGAGGAGCAGCCAGATCATTTGGACCTGAGGAGATGAAGCGCCATGGCTCTGTGGGTCGACTATCAGAAAACATGGAGGCCAAGATAGTGGACCCTGAAACTGGAGAGGCATTGCCTCCTTGCCGAAAAGGGGAACTGTGGATTCGAGGTCCAACTATCATGAAAGCACGTTTCATTTATGGTGTGATGGTCATGGTGACGGTGCAGGTCCCCCCCGCTGAATTGGAACATATACTTCACACAAATCCTGAAATTGCTGATGCTGCAGTAGTTCCGTACCCTGATGAAGAAGCAGGACAGATTCCTATGGCCTTTGTAGTAAGAAAACCTGGAAGCAACATCTCTGCAAATCAGGTCATGGAGTTTGTGGCAAAGCAGGTTTCTCCGTACAAGAAGATACGGCGTGTTTCTTTTGTCAATTCTATCCCAAAATCTCCTGCTGGCAAAATTTTGAGAAGAGAATTAGTTGATTATGCTCTATCCAGTGGTTCATCCAAATTGTGA 1605 0.5427 MATQNQTHSLPNTTIDPNTGFCSSSKIFHSLRPNVQLPPLSQPLSLTDYALSLLPAAATATENSALIDASTGRQLSYSLFLCQVKSLASSIQSLTPLSKGHVALILIPTSLHVPVLYFSLLSLGVTVAPANPLSTASELTHLVRLTKPAIAFATSAVASNIPALKFGTVLTDSPLFLSMLDANVDSHSRAPGVEVSQSESAAILFSSGTTGRVKGVFLTHRNFIALISGYYHLRNNQLAAGEAETQPVSLITLPLFHVFGFFMLVRSIALGETLVLMQRFDFEGMLKTVERYKISMMPVSPPLVVALAKSELVNKYDISSLRMLGCGGAPLGEQVASDFKAKFPNVEISQVPLLEIAKPGYGLTESGGGAARSFGPEEMKRHGSVGRLSENMEAKIVDPETGEALPPCRKGELWIRGPTIMKARFIYGVMVMVTVQVPPAELEHILHTNPEIADAAVVPYPDEEAGQIPMAFVVRKPGSNISANQVMEFVAKQVSPYKKIRRVSFVNSIPKSPAGKILRRELVDYALSSGSSKL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00999 534 ProSitePatterns Putative AMP-binding domain signature. 203 214 IPR020845 -
Vian4g00999 534 SUPERFAMILY Acetyl-CoA synthetase-like 55 528 - -
Vian4g00999 534 FunFam 4-coumarate--CoA ligase 2 429 529 - -
Vian4g00999 534 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 423 - -
Vian4g00999 534 Gene3D - 26 425 IPR042099 -
Vian4g00999 534 Gene3D - 429 528 IPR045851 -
Vian4g00999 534 Pfam AMP-binding enzyme C-terminal domain 441 516 IPR025110 -
Vian4g00999 534 Pfam AMP-binding enzyme 57 422 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00999 Vian-Chr4 15164160 15167096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00999 15 534 Monolignol Biosynthesis Gene Families AT5G63380 53.357 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00999 K01904 - gmx:100777435 766.918