Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00998 ATGGGACTTCTTTTAAATTTGTTTAAGACAGGTTTTCCATTGGATTCTTTACACGAGCAAGTTGTTCCTTGCTCCTTGAAGCAGTGTCCAAAGAAGAGTAGAACTTTCCTCATGGGATTTCATGACTTTGTTTTGCTATTCTGTTCATTTTGGTGTGTCTTTTTTGTAAGTAGTTGCAGTGCTCAGATGCAGTCCTCTCAGACCCAAGTGCTTCTTCAGTTGAAAAAGCACTTGGAGTACCCAAGACAATTGGAAATGTGGAGAGATCGTTGGACAGATCTTTGCTCTGTTTCTTCTTCTGGGCAAGTGAATGTCACATGCAAGGACAATTTTGTCACTGAGCTCTCCATCTTGGGTGATAAGCCAACCGAGGGTAGAGATTTTGATGGGTTTGCCATTCCAAATCAAACACTATCAGATAGCTTCTCCATGGACTCTTTTGTGGCTACAGTGGCAAGGTTAACCAGCCTGAGAGTGCTTAGTCTTGTCTCTTTGGGCATGTGGGGACCACTTCCTGATAGAATTCACAGACTCTATGCACTTGAACATCTGGATTTGAGTTTCAATTATCTTTATGGATCAATCCCTCCTAAGATTTGCACAATGGTGAACCTTCAAACTCTTGGATTGGGTGATAACTTCTTCAATGGAACCATCCCGAACGTGTTCAATTCATCAAGCAATCTCTCAGTTCTTAGTTTGAGGAATAACATGTTGAAGGGTCCATTTCCACCTTCAATCCTTAGTGTCACCTCTTTAAAAGACATTGACATGTCAAGCAATCAAATATCAGGGATACTGCAAGATTTTAGTGCTTTGAGTAGCTTGGAACAGCTAGATTTAGGAGAAAACAAATTAGAGTCTTTCCTGCCAGCAATGCCAAAAGGGTTGATTAGTCTTTTCCTCGGAAGAAATTCCTTCTCAGGTGAAATTCCCAAGCGCTATGGTCAACTTAACAGGCTTCAGAAGCTTGATGTTTCCTTCAATGCACTCACTGGCACTGCTCCTGCTGAACTTTTCTCTCTGCCAAACATCAGTTACTTGAATTTGGCTTCCAACATGTTGAATGGACCACTGCAAAGTCACCTAAAATGTAGCAGCCAACTTACATTTGTTGACATATCATACAATAGGTTAGTGGGGGACTTACCTTCTTCACTGAGCACTAGATCAGATAATAGAGTCGTTAAGAGTGACGGAAACTGTTTATCTGGGGGAGTGCAACATCAGCATTCAGTATCCTACTGCACAGAAGCTCATGTCAAGAAGAAATCATATAGAGTTGGAATTTTTGTTGGTGTCATTGTAGGAGTTCTTTTGATCTCTGTGGTTTTGGCTTTGACCATTGTCATAACTTGTAAGAAGTTCTTCCTTCAAGGTGTGTCAGAGCAGCACCTATTGCATAAAACAGTTCAAGATAGCAGCTACGCGGCAGGGTTCTCCTCTGAGCTTGTGACAAATGCAAGGTATATTTCTGAAATTGCAGAGTTAAGCAGAGAGGACCTCCCCACATGTAGGTCTTATTCTTTGGAAGAGCTAAAGGAAGCCACAAATAACTTTGATAACTCTACTTTTATGGGTGAAAATATATATGGGAAGCTTTACAGAGGAAAACTGCAGAGTGGGATGCAGATTGTAATAAGGTCCCTGCCTGTGTCAAAAAAGTATTCAGTTAGAAATTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTCCGTCACCCTCATTTGGTATCCCTTCTTGGTCACTGCATTGATGGTGTTGTAGGAGAGAATAATGAGACAAATGTCTTTCTAATTTATGAATATGTGCCAAATGGGACTTTTCAAACTTATCTCTCTGGACATAGTTCTGGCAAGGTTTTCAACTGGTCTGAGCGATTATCAGTACTAATCAACATTGCTAAGGCTGTCCACTTCCTACACACTGGCATGATACCTGGTTTCTTCAAAAATCGACTTAAGAGTGACAATATCTTGCTGAGTGAGAATTGGATGGCAAAGTTGAGTGACTATGGATTGTCCATTATATCAGAAGAAGCTGATGCATGTGGGGTAAAAGGAGAAAGTCCTAATTCGTGGCAAATGAAAATGTTAGAGGATGATGTTTATAGCTTTGGATTCATACTACTGGAGGCACTGGTTGGACCTTCAGTATCAGCTGAAAGAGTAACAGCTGTGTCGAATGTAATGGCAACTTTCAATAGTCAGGATGGGTGGAAAGGGATTGTGGACCCAATTGTGCAAGCTACTTGCTCAAAAGAATCTCTTTTTGTTGTGATTTCCATAACAAATAAATGCATATCTCCTGAGTCATGGAACCGACCATCCATTGAGGATGTTCTTTGGAACCTTCAGTATGCTTCTCAAATTCAGGCAACAGATGATGGATGA 2391 0.409 MGLLLNLFKTGFPLDSLHEQVVPCSLKQCPKKSRTFLMGFHDFVLLFCSFWCVFFVSSCSAQMQSSQTQVLLQLKKHLEYPRQLEMWRDRWTDLCSVSSSGQVNVTCKDNFVTELSILGDKPTEGRDFDGFAIPNQTLSDSFSMDSFVATVARLTSLRVLSLVSLGMWGPLPDRIHRLYALEHLDLSFNYLYGSIPPKICTMVNLQTLGLGDNFFNGTIPNVFNSSSNLSVLSLRNNMLKGPFPPSILSVTSLKDIDMSSNQISGILQDFSALSSLEQLDLGENKLESFLPAMPKGLISLFLGRNSFSGEIPKRYGQLNRLQKLDVSFNALTGTAPAELFSLPNISYLNLASNMLNGPLQSHLKCSSQLTFVDISYNRLVGDLPSSLSTRSDNRVVKSDGNCLSGGVQHQHSVSYCTEAHVKKKSYRVGIFVGVIVGVLLISVVLALTIVITCKKFFLQGVSEQHLLHKTVQDSSYAAGFSSELVTNARYISEIAELSREDLPTCRSYSLEELKEATNNFDNSTFMGENIYGKLYRGKLQSGMQIVIRSLPVSKKYSVRNFKLRLDLLAKLRHPHLVSLLGHCIDGVVGENNETNVFLIYEYVPNGTFQTYLSGHSSGKVFNWSERLSVLINIAKAVHFLHTGMIPGFFKNRLKSDNILLSENWMAKLSDYGLSIISEEADACGVKGESPNSWQMKMLEDDVYSFGFILLEALVGPSVSAERVTAVSNVMATFNSQDGWKGIVDPIVQATCSKESLFVVISITNKCISPESWNRPSIEDVLWNLQYASQIQATDDG 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00998 796 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 50 408 - -
Vian4g00998 796 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 603 796 - -
Vian4g00998 796 Gene3D Transferase(Phosphotransferase) domain 1 603 795 - -
Vian4g00998 796 SUPERFAMILY L domain-like 20 408 - -
Vian4g00998 796 Pfam Leucine rich repeat 320 379 IPR001611 GO:0005515
Vian4g00998 796 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 297 421 - -
Vian4g00998 796 Pfam Protein tyrosine and serine/threonine kinase 526 781 IPR001245 GO:0004672|GO:0006468
Vian4g00998 796 Gene3D Phosphorylase Kinase; domain 1 482 602 - -
Vian4g00998 796 Gene3D Ribonuclease Inhibitor 297 430 IPR032675 -
Vian4g00998 796 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 64 295 - -
Vian4g00998 796 Gene3D Ribonuclease Inhibitor 64 296 IPR032675 -
Vian4g00998 796 ProSiteProfiles Protein kinase domain profile. 520 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00998 796 SUPERFAMILY Protein kinase-like (PK-like) 503 785 IPR011009 -
Vian4g00998 796 SMART LRR_typ_2 178 202 IPR003591 -
Vian4g00998 796 SMART LRR_typ_2 250 272 IPR003591 -
Vian4g00998 796 SMART LRR_typ_2 273 296 IPR003591 -
Vian4g00998 796 SMART LRR_typ_2 318 342 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00998 Vian-Chr4 15116158 15121763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00998 45 732 Miscellaneous Gene Families AT5G14210 49.571 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vian4g00998 PK_Tyr_Ser-Thr 5.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00998 - - gmx:100802978 1268.83