Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00993 ATGTCCTTAAGGACATACTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTACTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCTGCCTTGAACCTCGCATCATATGGAAGTAGTCATGCTTTCAAATTAACCAAGGAAGATCTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAACGAGTCTCGTGTGATGAAAATGCTAAACCGTATATCGGATATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCACGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAACCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTGGGAAAATCAACTGGCATTCGGCACACTGCTGTCATTAAGAATGGAGAGATGCTTGGTGTTACACATTTGAGAAACAGAAAAGTCCTTTCTAATGGTTTCATTTCTCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGAGATAGAGCATTTGGTACATCAAGTGAACTTTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTTACTAGCATGGAAATATTTCGCCCCAAAATTTTAGGTAGTTTGGCTCCAAATACCTTAAAAGGGAAGATAAGGATTACCACAAGATGCTTATGGCTCGACAAAGGAAAGTTGATGGATGCACTCTACAAATCAGCCCATGCCGCTCTTTCAAGCTGCCCTGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTGTCTGAGGTATTGAGAAAGATGGTGAGGAAGTATAGTGGTAAACGGCCTGAAGTTATTGCCATTGCTATAGAAAATCCTGCATCCACTATTACTGATGAGATAAACACAAAATTGTCTGGAAAAACCCATGCGGGTCTTGGAATATCAACAGCAAAAAGAGCAGTAGATAGACATGAGAAAGGAAATCAGCCCACCTCACTGCAAATTACAGATGATAGTATTCATAATGCCAGTGGACCTGAGGATTATTTATCTGATGAAGACAACACTGCAAGTGGAGCTGAGGGTGATTTATCTGAGTTAGAGGATTCAGATGAATTTTGGAAACCATTCATTGCACCATTACCTGTCGAGAAGCCTTTGGGTGCTAACAATGCATATGATTCACAAAAGGAGCATGAGTCCAATCGGAAGAAAGATGATTCTAAGATCATTGATAAAGCTAAGTCTGAAGAAATCTCTACTTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAGAACTGATGAAGTTAAGAAGCTGATTGGTATGCGTGAGGAACTACATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATATCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATAGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCTCCTGCAACAAAATGA 1635 0.3976 MSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRISDIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVTHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVTSMEIFRPKILGSLAPNTLKGKIRITTRCLWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVIAIAIENPASTITDEINTKLSGKTHAGLGISTAKRAVDRHEKGNQPTSLQITDDSIHNASGPEDYLSDEDNTASGAEGDLSELEDSDEFWKPFIAPLPVEKPLGANNAYDSQKEHESNRKKDDSKIIDKAKSEEISTSEPKSSKSVKRNKWRTDEVKKLIGMREELHDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSKKSWPYIEDMERIMSDKEAPATK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00993 544 MobiDBLite consensus disorder prediction 403 451 - -
Vian4g00993 544 MobiDBLite consensus disorder prediction 336 385 - -
Vian4g00993 544 MobiDBLite consensus disorder prediction 414 451 - -
Vian4g00993 544 CDD GT1 451 516 - -
Vian4g00993 544 Gene3D - 453 513 - -
Vian4g00993 544 Gene3D - 1 109 IPR042173 -
Vian4g00993 544 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 107 147 IPR011108 -
Vian4g00993 544 MobiDBLite consensus disorder prediction 345 359 - -
Vian4g00993 544 ProSiteProfiles Myb-like domain profile. 445 509 IPR001005 -
Vian4g00993 544 PANTHER RIBONUCLEASE J 1 544 - -
Vian4g00993 544 Pfam Myb/SANT-like DNA-binding domain 450 534 IPR044822 -
Vian4g00993 544 SUPERFAMILY Metallo-hydrolase/oxidoreductase 23 164 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00993 Vian-Chr4 14959136 14969294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00993 452 538 Trihelix Transcription Factor Family AT2G38250 34.831 2.12e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian4g00993 Myb_DNA-bind_4 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00993 - - gmx:100783850 929.087