Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00989 ATGGTTTCAACGAGACGCAACAGTGGATCTTTCTCCAACGCCAACAAGAGGCCGTCTTCTTCTGACGACAAAACTCCCTCCCCTTCCCCCAAGCGCCAAAAGGTCGACAATGTTGCTGCCGCCTCGGAGAAACCGATGCCGCCGGCGGAAAATTCCAAGGATTTGGGCATGCGGGAGCCTCCCGCTGATCCCGGAGAATGCGAATCTCGAGACGCTCAGATCGCCGGTGACGTCAATCCAGACGGCAAGGCCGATCCCACGCCGCCGATCGCCGATGGTTCTACACCGACTGTGGTTGCTGATAAACCTAGGGGTTCGTTCTCTTCTTGGGCTATATATCAGAAGCAAAACCCGAATTTCGAGGCTTCTGTTCCCTGGTGCAGACTCTTGTCTCAATCTGCGCAGAATCCCAATGTTTTAATTTGCACACCCAACTTTACTATTGGGTCTAGTAGGGGTTGCAATTTCCCGTTGAAGGACCAGACTATAAGTGGAAATTTGTGCAAGATCAAACACACGCAGCGCGAGGGAAGTGCTGTGGCCGTGCTAGAAAGTACGGGTAGCAAAGGATCGGTGGTAGTGAATGGCACGCTCCTCAAGAAGAGTACCAGTTATGTGCTTAACTCGGGGGACGAGGTGATTTTTGGTTTGATTGGGAATCATTCTTATATTTTTCAGCAAATAAATCCTGAAGTTGCAGTTAAGGCTGCAGAAATTCAGGGTGGTGTCAGCAAGTTTTTCCAGATTGAAAGGAGGGCTGGAGACCCTTCAGCCGTGGCTGGAGCTTCTATTCTGGCTTCTCTTTCCAGCCTCAGACCGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCTGGTAAACCTATTCAGGGTACTGATGTTCCTAGTCATTCTGTTCTCCCTGATGGTACAGAGACCGGGCTCGAAGGTGTGGAAGGCAACTCTGTTCCAAATATAGCGACAGATAAAGCTGCTGATGTTGGAGCAAGTGACAAGAATTTGCCTATGGATTGCGATTCAGATGATGCTGGCACAGAGGCAGGCAATGTATTCGAAGAAAGACATGGGACGAGGGATGTGCAAGCTGCATCGACTTCCGGTACTTCTGTTCGCAGTGCAGTTTTTAAAGAGGATGTTCATGCTGCAATACTTGATAGGAATGAAATAGAAGTGTCCTTTGACAACTTCCCTTACTACTTAAGTGAGAATACAAAAAATGTTCTAATTGCAGCTTGCTTTATACACCTGAAGCATAGAGAACATGCAAAGTACACCACTGATCTTACAACCATAAACCCTCGTATTCTACTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCGAAACACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCGCTTTTGGGTGGTTTAACTTCCAAGGAAGCTGAGCTGCTCAAAGATGGATTTAGTGCTGATAAATCCTGTGGCTGTGCTAAACAAAGTCCTTTAACTACAGACATGGCTGGGAGCATGGATCCACCAGTTAGTGAACCAGAGACACAGAACTCCTCAAATGCACCTACTCCATGTGGTTTTGAGTCTCAACTTAAGTTTGAAGCTGATAATTTACCATCTACATCTGGGGCATCTAAAACTTGTGTGTTTAAACTAGGTGACAGGGTAAAATACAGTTCATATTCTGGGGGAATATATCAGCTTCAGACAATTTCTACAAGGGGTCCACCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTCGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCCATACCTGATGGAGTTGACCTTGGAGGTTGCTGTGAGGGTGGTCAAGGATTTTTCTGCCATGTGAATGATCTTCGGTTGGAAAACAGTGGCATTGAAGAACTTGACAAATTACTCATTAATACATTATTTGAGGTTGTGGTCAGTGAGAGCAGAAATGAACCCTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAACGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAATCTTCCGGACAACGTGGTGGTAATAGGTTCACATACTCACACTGACAGTCGCAAAGAGAAGTCACATCCTGGGGGTTTACTTTTTACGAAGTTTGGCAGTAATCAGACGGCTCTTCTTGATTTGGCTTTCCCCGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAGGTCCCAAAGCCAAACAAAACCTTAACTAAACTTTTCCCGAATAAAGTGACAATTCACATGCCACAGGATGAAGTACTTCTAGCATCTTGGAAGCAGCAACTTGATCGAGATGTTGAGACTCTTAAAATTAAAGGAAATTTGCACAATTTACGTTCTGTTTTGAGCCGTTGTGGGGTGGAATGTGAAGGGCTTGAATCCTTGTGCATTAAGGATCAAACACTTAGTATTGAAAATGCAGAGAAGATTGTTGGTTGGGCTATAAGCCGACATCTCATGCAGAATGCTGAAACTGATCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGAATTGGCATCTTACAGTCTATCCAGAATGAGTCAAAAAGCCTGAAGAAGTCTCTTAAGGATATTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAACGACATTGGTGTTACTTTTGAGGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCTGAGTTATTTTGCAAAGGGCAATTAACCAAGCCATGCAAGGGCATTCTTTTATTTGGTCCTCCTGGAACAGGCAAGACAATGCTTGCAAAGGCAGTTGCTACCGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCGAGTATCACATCTAAGTGGTTTGGTGAGGGCGAAAAATATGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGAAGGATACTGAGAGAGTTCTGGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAAGCTGTCATAAGGAGGCTGCCTCGGAGGTTAATGGTAAATTTGCCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTCATACTGGCAAAAGAAGATTTGTCTTCTGGTCTTGATTTGAATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGAATTTGTGTGTAACTGCTGCACATTGTCCAATTAAAGAGATATTAGAGAAGGAAAAAAAGGAACAGGCTGCTGCTCTGGCAGAAGGTAGACCTGCTCCAGCAATAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAGTATGCTCATCAACAGGTGTGTGCAAGCGTTTCCTCTGAATCCGTAAATATGACGGAGCTTCAACAATGGAATGAACTATACGGTGAAGGTGGTTCAAGAGTAAAAAGAACATTAAGCTATTTCATGTGA 3612 0.438 MVSTRRNSGSFSNANKRPSSSDDKTPSPSPKRQKVDNVAAASEKPMPPAENSKDLGMREPPADPGECESRDAQIAGDVNPDGKADPTPPIADGSTPTVVADKPRGSFSSWAIYQKQNPNFEASVPWCRLLSQSAQNPNVLICTPNFTIGSSRGCNFPLKDQTISGNLCKIKHTQREGSAVAVLESTGSKGSVVVNGTLLKKSTSYVLNSGDEVIFGLIGNHSYIFQQINPEVAVKAAEIQGGVSKFFQIERRAGDPSAVAGASILASLSSLRPDLTRWKSPSQTAGKPIQGTDVPSHSVLPDGTETGLEGVEGNSVPNIATDKAADVGASDKNLPMDCDSDDAGTEAGNVFEERHGTRDVQAASTSGTSVRSAVFKEDVHAAILDRNEIEVSFDNFPYYLSENTKNVLIAACFIHLKHREHAKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKHFGAKLLIFDSHSLLGGLTSKEAELLKDGFSADKSCGCAKQSPLTTDMAGSMDPPVSEPETQNSSNAPTPCGFESQLKFEADNLPSTSGASKTCVFKLGDRVKYSSYSGGIYQLQTISTRGPPNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGCCEGGQGFFCHVNDLRLENSGIEELDKLLINTLFEVVVSESRNEPFILFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEVLLASWKQQLDRDVETLKIKGNLHNLRSVLSRCGVECEGLESLCIKDQTLSIENAEKIVGWAISRHLMQNAETDPDAKLVLSCESIQYGIGILQSIQNESKSLKKSLKDIVTENEFEKRLLADVIPPNDIGVTFEDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSGLDLNAIASMTDGYSGSDLKNLCVTAAHCPIKEILEKEKKEQAAALAEGRPAPAISGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELQQWNELYGEGGSRVKRTLSYFM 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00989 1203 SUPERFAMILY SMAD/FHA domain 118 225 IPR008984 GO:0005515
Vian4g00989 1203 CDD FHA 128 226 - -
Vian4g00989 1203 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 375 1202 - -
Vian4g00989 1203 Gene3D - 1071 1165 - -
Vian4g00989 1203 Gene3D - 125 233 - -
Vian4g00989 1203 CDD RecA-like_ATAD1 902 1068 - -
Vian4g00989 1203 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 897 1073 - -
Vian4g00989 1203 Gene3D - 897 1178 IPR027417 -
Vian4g00989 1203 MobiDBLite consensus disorder prediction 502 525 - -
Vian4g00989 1203 MobiDBLite consensus disorder prediction 277 291 - -
Vian4g00989 1203 MobiDBLite consensus disorder prediction 1 26 - -
Vian4g00989 1203 Pfam FHA domain 147 216 IPR000253 GO:0005515
Vian4g00989 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1176 IPR027417 -
Vian4g00989 1203 Coils Coil 859 879 - -
Vian4g00989 1203 SMART AAA_5 935 1072 IPR003593 GO:0016887
Vian4g00989 1203 MobiDBLite consensus disorder prediction 277 316 - -
Vian4g00989 1203 MobiDBLite consensus disorder prediction 1 102 - -
Vian4g00989 1203 Pfam AAA+ lid domain 1093 1127 IPR041569 -
Vian4g00989 1203 ProSitePatterns AAA-protein family signature. 1042 1061 IPR003960 GO:0005524|GO:0016887
Vian4g00989 1203 Pfam ATPase family associated with various cellular activities (AAA) 939 1068 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00989 Vian-Chr4 14905977 14917206 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00989 898 1150 Calmodulin-binding Proteins AT3G56690 40.385 5.42e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00989 - - gmx:100780098 2100.86