Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00988 ATGGCAGTCACATTCTACGACCTTAGCTCTGCCTCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCTCACGCAGTTACATCACCGGGTACCAAGCTTCAAAAGATGATCTCACTGTCTATGCAGCTTTGCCAACTGCTCCATCAACTGAGTATGTCAATGTGTCTAGGTGGTTCAAGCACATTGATGCTTTGTTGAGAATCTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTTAAGGGATCTCTTGTTGCTGAGCCTGTTGCAACTCCCCCAGCTGCTGATACAAAGGCAACGGAGGAACGGGCAGCTGCAGCGAAGGCATCTGGAAAAAAGAAAGAATCCGGGAAGTCATCTGTTCTGATGGATGTGAAACCATGGGATGATGAAACGGACATGAAGAAGCTCGAGGAAGCAGTGAGATCTGTTAGCATGGAAGGCTTGCTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGCATCAAGAAACTGCAAATTATGCTTACTATCGTGGATGACCTAGTTTCTGTCGACACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATAATCAACAATCGTGGGATTTGAAAATCATGGCAGCGAGGGGAATTGCGCTATTTAGAAATTATGTTGTAGGGAAAGCTCTCATGTGA 669 0.4604 MAVTFYDLSSASGLKKLDEYLLSRSYITGYQASKDDLTVYAALPTAPSTEYVNVSRWFKHIDALLRISGVSGEGSGVTVKGSLVAEPVATPPAADTKATEERAAAAKASGKKKESGKSSVLMDVKPWDDETDMKKLEEAVRSVSMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLTVEPINEYNQQSWDLKIMAARGIALFRNYVVGKALM 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00988 222 SUPERFAMILY GST C-terminal domain-like 11 67 IPR036282 -
Vian4g00988 222 SUPERFAMILY eEF-1beta-like 114 194 IPR036219 -
Vian4g00988 222 Pfam EF-1 guanine nucleotide exchange domain 119 194 IPR014038 GO:0003746|GO:0006414
Vian4g00988 222 CDD EF1B 115 184 IPR014038 GO:0003746|GO:0006414
Vian4g00988 222 FunFam Elongation factor 1-beta 1 like 111 206 - -
Vian4g00988 222 Gene3D - 4 80 - -
Vian4g00988 222 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 200 - -
Vian4g00988 222 FunFam Elongation factor 1-delta 1 3 78 - -
Vian4g00988 222 Gene3D - 110 204 IPR014717 -
Vian4g00988 222 SMART EF1_GNE_2 117 202 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00988 Vian-Chr4 14874131 14875728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00988 5 198 Eukaryotic Initiation Factors Gene Family AT2G18110 70.000 2.72e-101 291