Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00971 ATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGGGAGTTTTCTGTGGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCAGCATTATCCAAGTTCAAAGATGTTGCTGCTGGTGCTGGAGTCTCCAAAGTGGCTTCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTGACTGTGTCATGCCTTGTGGACGGGTGCAATTCTGATCTTAGCAATTGTAGAGATTATCATAGGCGACACAAGGTGTGTGAGCTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAGCGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAACCTCACACCCGACCTGGTAGTTTTTTATCGAATTACCAAGGTACTCAGTTGCTACCATTCTCAAATCCACACGTGTATCCTTCCACTGCCATGATGAGCACCCCTTGGAGTGGAGGGCTTGTGACTTCCGCTGCAGATGCGAGGTTGCACAACCAGCACCACCATCAAGAGCTTTTTCTAGGATCTTCTCACAAAGAAGGGAAGCAAGTGGCATTCCTACACGGTAACCATAGCAACCAAAGCCTTCCCTTTCCGTCTCCTTCTGTGTGCCACACGCTTCTCAGGAGCAGCCCTTTATCAGAAAGTTGTGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGGGAATGGTTTGAATCAAATGGTGCAGGCACCGTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGTCTGCAGGATAACACCAACTTAGAGTCTGTGGAGCGAGTTTTGGTTCCCAATGGCAGTGACCACTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGAAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1071 0.4855 MEEHNRFGVYRMEGEFSVDLKLGHVGNSGTESALSKFKDVAAGAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPHTRPGSFLSNYQGTQLLPFSNPHVYPSTAMMSTPWSGGLVTSAADARLHNQHHHQELFLGSSHKEGKQVAFLHGNHSNQSLPFPSPSVCHTLLRSSPLSESCGARSKMFCESLTTTNSVHDTPCALSLLSSSQTHTPGNGLNQMVQAPSMSLMQPLGLSLQDNTNLESVERVLVPNGSDHCSSMYSLGSDGSHCNEAPQLFPFQWE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00971 356 MobiDBLite consensus disorder prediction 134 148 - -
Vian4g00971 356 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Vian4g00971 356 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 349 IPR044817 GO:0003677
Vian4g00971 356 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Vian4g00971 356 MobiDBLite consensus disorder prediction 133 159 - -
Vian4g00971 356 Pfam SBP domain 72 145 IPR004333 GO:0003677
Vian4g00971 356 Gene3D - 64 133 IPR036893 GO:0003677|GO:0005634
Vian4g00971 356 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00971 Vian-Chr4 14364539 14367377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00971 8 356 SBP-box Gene Family AT5G50670 42.308 7.55e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian4g00971 SBP 3.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00971 - - gmx:100787407 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00971 4 14364539 14367377 Vian4g00971 4 14364539 14367377 ECH
Vian1g03793 1 60994997 60997483 Vian4g00971 4 14364539 14367377 PCT