Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00962 ATGGAAGCCAAGACAGTTCATAAACGATGGCGGTCCACCCCGGAACAAGTTAGAATCTTGCTAAACATCTACAACCATGGGATCATCAATCCTAGTCGAGATCAAGTTTGCGAGATTACAGGACGATTCCAGGAGTACGGGGAAGTCGGAGAATACAGCGTCTATTGTTGGTTTCAAAACCATGGAAATCGGGTGAAGAATCGAGGCTGGCACCAAAGCATCCCTGGTACATCTGGATCTTCATTTTCCCTCCTTCCTCCATATATGTATGGTAAATCTTCTTTCCTTTCCTATCCTTCATGGGTACTTCCACAGACTCCGAAGCTCTTAGATCTCTTTCCCATTCCCGTTATACGCAAAGAAGAAGAGAGAGTTACTCAACCCATGCCGTTTCGCACCCAAGCTCCTTCCACAAAGCTTTCCTTGAGGTTGTCGCTCGCCAATCAGCAGTCTCCTTAA 459 0.4641 MEAKTVHKRWRSTPEQVRILLNIYNHGIINPSRDQVCEITGRFQEYGEVGEYSVYCWFQNHGNRVKNRGWHQSIPGTSGSSFSLLPPYMYGKSSFLSYPSWVLPQTPKLLDLFPIPVIRKEEERVTQPMPFRTQAPSTKLSLRLSLANQQSP 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00962 152 PANTHER WUSCHEL-RELATED HOMEOBOX 9 7 68 IPR044557 GO:0003700|GO:0050793
Vian4g00962 152 Pfam Homeodomain 8 66 IPR001356 GO:0003677
Vian4g00962 152 SUPERFAMILY Homeodomain-like 5 68 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00962 Vian-Chr4 14177918 14178437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00962 9 86 Wox Gene Family AT5G45980 41.772 1.41e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian4g00962 Homeodomain 2.4e-06 CL0123