Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00961 ATGTTTGTTAAAGCTGTTCATTTGAAGAGTTGCATTAGCGAGAATTTACTTGTAAGAAGAACTATGCTTAGTTTTGTTAGCCTGATAATGAAAGAAGTGATTGGAAGTAGAAACTGTGTTTTGGCATTTGCGCTTTTTGATTACAACATGATCCTTTCTTTTGCGATTTCCTTCTCCACGATCAGCAAGGGTTTGGTTGTGGGTTTACTTGGGGCTTCTGTAATTGAAGGAAGTGTCTTCATTGTGCATGTGGAACTGTCAGATTCTGGAGACACACTGGCTAGCATGGAATGTAAAAAGGATGGTGCCGTAAGGGCAAAAGAACTTGCAGAGAAGATGCTTTTACAGAAGGACTTTGGTGGGGCAAGAATGCTTGCAATGAAGGCTCTAGAATTATATCCCAATCTTGATGGCCTTCCTCGATTTCTGGCAACTATTGAGGTGTATATCGCAGCCGATAAAATGGTTAATGGAGAAGTTGACTGGTACAGGATCCTTGGTGTGCAACCCTTGGCTGATGAAGAAACAATTCGAAGACGATATAGGAAACTGGCTCTTACTCTGCACCCTGATAAAAATAAATCTGTAGGTGCAGATGGGGCGTTTAACCTTATCTCACAGGCTTGGAGTTTATTATCTGATAAGGACAAGAGGACCACATATGACCAAAAGTACAATTTATGGCGAACATATCATGGTAATCCTGGTGGGAAACCATCTGCGCCAGTTACTCAGAATGGTTTATATAGTAGTTTATTCAGGCCTGTGTTGTTGAAACCCACATTTTGGACCATTTGCAACTTCTGTAAGACAAAGTTTGAGTACCATAATGTTTATATTAACTCTGATCTTATCTGTACATGTTGCCATAAGCCATTTGTGGCTTCTGAGACATCACCTCCACCTGGATACAGAAATGGTTCGTCCTCTTCAATAATTTCTCAGATGAAGCAACATAACTTCAACTTAAGCAGAATGGAAAGAAGTAATGGAAATCATGTTCCCGGAAGGACACCAATGTCTGCTGTCAATTCAGCACATGGGTCAGGTCCTTTCTCTATGCCTAGTGGCACTTTCCGGATACCAACATCAGCTTCTAGTGCTGCAGAAACTCTTGGTGCATTTAGGATATCTTCTGAAAATTTGAAGAGAATGCATGAAGATTCAACAGTGTCTTTAGAGGATGCCCATATTGGGAAAATTCATGCTGCTGAGAGAACTGGTGCTGGTTCAGTTTTTCAGTCCTCTGGTTTTGGTTCATATTCTATTATGAAAGGTGACAAGCCAAGGAAGAGAAGGTCCACTGATGAACATAAAGTAGGTAGAGATGGAAGAGATATGGAAAGCAAAACAGTATCTCAAACTGAAGGAACAAACTTGGCTAATGAATTTGGGTCAGGAAGGGTTAATGCTGCTGGAATTTACAAACGCAATGGTGTTAGGGAGGTATCACAGCTTCAAATGAAGCACCTATTGATGGAAAAGGCTCGGAAGGAGATTCTTAAAAATCTTGGTGAATTGAAAGCTTCTTCTGCATCAAAGAGTCTAAACAAGTCAAAGAATACTGACTCAGAAATCAGTGAGAGGGGGAAAAGTTGTGAAATGAATGGTTTAAAGCCTGGTGCGCTAGAATTTGTTGATTCTAAGGCTGCCGGGAAGAAGTGTTTTTCTGTTCATCCAGATCCTGAGCTTCCTGGTTCTCTCTCTATGAATGTTCCAGACCCAGATTTCCATGATTTTGATGGAGACCGTATTGAAAGTGCTTTTGGTGAGAACCAGGTCTGGGCTGCATATGACAATGATGATGGCATGCCCCGGTTCTATTGTTTAATCCATGATGTAATCTCAAAGAATCCTCTGAATATGAGGATAAGCTGGTTGAATACCAAAAGCAATGATGAATTGGCCCCAATAAAGTGGATCAGTTCTGGCTTTCTTAAGACCAGTGGAGAGTTCAGAATAGGAAAGCGTGTGTATTATAGCACTCTTAACTCCTTTTCGCACAGGGTGAAATGGACAAAGGGTTCGAGAGGGGTTGTCCATATATATCCGAAGAAAGGTGATGTATGGGCACTGTATCGGAACTGGTCCCTTGACTGGAATGAATTCACTAAAGATGAAATCATACAGAAATATGACATGGTGGAGGTGCTTGAAGACTACAGTGAAGAGCAAGGGGTGAATGTTGCCCCACTTGTCAAGCTTGCAGGTTTCAAGACGGTATTTCGGCAGAATGTTGATCCAAGAAAGGTCAGGAATATTTCAAAGGCGCAGATGTTTCGTTTCTCACACCAGGTACCTTCATACTTGCTTACTGGTGAAGAGGGTCCCAACGCTCCTAAAGGTTGCTTGGAGCTTGATCCTGCTGCTACGCCGATGGAGCTTCTTCAGGTGTTAGCTCAAGATCTGGAGCAAGAAATAATAATGACAACTGAAAAATCTGTGGAAGATGAATTGAAGCACAAAGAGAATTCCAAGGAGGAGGGTTCGCTTAAGGGGTGCCAGTCAACCAAGGAAGAAGGTTCTGATGCAGGATTAGGAGAGAAGAGAAGCAAGCCTGAGATTTTGTTTGTATATAAGCGGAGACGTCTGGGGGAAAAGAGAGCTGTGAAGTGTTAA 2619 0.4192 MFVKAVHLKSCISENLLVRRTMLSFVSLIMKEVIGSRNCVLAFALFDYNMILSFAISFSTISKGLVVGLLGASVIEGSVFIVHVELSDSGDTLASMECKKDGAVRAKELAEKMLLQKDFGGARMLAMKALELYPNLDGLPRFLATIEVYIAADKMVNGEVDWYRILGVQPLADEETIRRRYRKLALTLHPDKNKSVGADGAFNLISQAWSLLSDKDKRTTYDQKYNLWRTYHGNPGGKPSAPVTQNGLYSSLFRPVLLKPTFWTICNFCKTKFEYHNVYINSDLICTCCHKPFVASETSPPPGYRNGSSSSIISQMKQHNFNLSRMERSNGNHVPGRTPMSAVNSAHGSGPFSMPSGTFRIPTSASSAAETLGAFRISSENLKRMHEDSTVSLEDAHIGKIHAAERTGAGSVFQSSGFGSYSIMKGDKPRKRRSTDEHKVGRDGRDMESKTVSQTEGTNLANEFGSGRVNAAGIYKRNGVREVSQLQMKHLLMEKARKEILKNLGELKASSASKSLNKSKNTDSEISERGKSCEMNGLKPGALEFVDSKAAGKKCFSVHPDPELPGSLSMNVPDPDFHDFDGDRIESAFGENQVWAAYDNDDGMPRFYCLIHDVISKNPLNMRISWLNTKSNDELAPIKWISSGFLKTSGEFRIGKRVYYSTLNSFSHRVKWTKGSRGVVHIYPKKGDVWALYRNWSLDWNEFTKDEIIQKYDMVEVLEDYSEEQGVNVAPLVKLAGFKTVFRQNVDPRKVRNISKAQMFRFSHQVPSYLLTGEEGPNAPKGCLELDPAATPMELLQVLAQDLEQEIIMTTEKSVEDELKHKENSKEEGSLKGCQSTKEEGSDAGLGEKRSKPEILFVYKRRRLGEKRAVKC 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00961 872 PRINTS DnaJ domain signature 181 196 IPR001623 -
Vian4g00961 872 PRINTS DnaJ domain signature 163 181 IPR001623 -
Vian4g00961 872 PRINTS DnaJ domain signature 197 217 IPR001623 -
Vian4g00961 872 ProSitePatterns Nt-dnaJ domain signature. 202 221 IPR018253 -
Vian4g00961 872 Coils Coil 793 813 - -
Vian4g00961 872 MobiDBLite consensus disorder prediction 425 450 - -
Vian4g00961 872 SMART dnaj_3 160 217 IPR001623 -
Vian4g00961 872 Pfam Domain of unknown function (DUF3444) 569 775 IPR024593 -
Vian4g00961 872 ProSiteProfiles dnaJ domain profile. 161 225 IPR001623 -
Vian4g00961 872 MobiDBLite consensus disorder prediction 511 533 - -
Vian4g00961 872 Pfam DnaJ domain 161 222 IPR001623 -
Vian4g00961 872 PANTHER BNAC03G44070D PROTEIN 96 792 - -
Vian4g00961 872 MobiDBLite consensus disorder prediction 815 834 - -
Vian4g00961 872 SUPERFAMILY Chaperone J-domain 158 240 IPR036869 -
Vian4g00961 872 Gene3D DnaJ domain 159 261 IPR036869 -
Vian4g00961 872 MobiDBLite consensus disorder prediction 815 848 - -
Vian4g00961 872 MobiDBLite consensus disorder prediction 420 455 - -
Vian4g00961 872 CDD DnaJ 161 214 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00961 Vian-Chr4 14162835 14165809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00961 69 302 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.557 6.44e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00961 - - gmx:100797672 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00961 4 14162835 14165809 Vian4g00961 4 14162835 14165809 ECH