Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00939 ATGGGAGCTCCTGATCTCTCACATCACGTGTTCGAAGAAGGAGAGAAATTTGAACAGTTGATTGAGAAGAGAGGAAAAATGGGTGGCGAGGAACAGGGATGTATTCCTCCTGCTTTTAGTGGTATTGTGGCCAGCATGGTTAATAAGAAAATCAATCTCAATGATTCAACTGGGCAGCAGTGGAAGGTTAAAGTATCAGAAGTTAATGGTTCATTTGTTTTTGGGGAGGGATGGAGTCGTTTTTCATCAGGTCATGGGCTTAAAGTTGGCTATCTTTTGGTACTCAATTACATTAAGGATTTGCACTTTGATGTCAAGATCTATGATACTTCTGCCTGTGAAAAGCTTGGTCTTCCTGAAAAAAGAAATCAGAAGAAAAGAAGTAGGGGCAAAATTGGCTCACCAGTTAGAGATGGTATCTTGGTCAGACAAGAACTCGATGCGCCAAGGCAGTGCAGCAAGGTTGACTTAGTAGTACCACAAAAAGCTAAAGAGAGTGGCCAACATGTGCTCATACTAGATCACAGTGAAGAAGACCCATGTCGTTCAAAAAGCCTAGAATTTGACCAGAGCCATGAGGATGATGGGACCATGAAAAGTCAGAACGGAGATTTAATAGTTTCTAATGTTGATTATGAATCCAATATCGTTGAAAAGGATGCAATGATATGCAGTAAGGATACTATGTTTGAAGGGGTGTTGAGTACTGAAGTTGCCTTGGATATATCTGAACTTCGAATATATGGAAGAAGTGCTTCTCTAGAGGCAGACACATATACATATGACAAGACTTTTAATTCGAAAATTGAAGAGAACAAAGCCATCTTGTCCAACAGGGAAGCTCAAGAGTGCCAATTTTCCAAGGCCTTAGAAGTTCAATGGGATCTCAAATTCATTGATGCTCATATTCATAATGGTAAAATGAAGAAATTTCCTGTGGACATGACTCCCAACTTGGACAGCTCCATGGATGAATTTCATTTAACAGGTGAAGTGTCTAAAAAGTTGAAGAAAGAGCTTGTAACTCTCAATGAAATGGAAGCAACAGGATTGCCCAAGGAAATCAACGGACTGTTGAACTCTGACATATTTAATGAAGATAATGCGAGTCACTTTAAACCTACACAGCTCTCCTGTGTGGTTCCTCATGATAACGAATTGCCCTCATGCCTGCCTTTGATTCGCAAGGTAAAGGTAGATCAGCAAAGGAAGATGTTAGTATTTCTTCGGGATCCACTGAGGAGATTGTGGCCGGTGTATTATCATGAAAAACCACATTTGAAATTACTGGCACATGGATGGTTAAATTTTAGCAGAGCTAATAACATTCAGCCAAAAGATGAGTGTATTTTTGAGGCTGAGGTTGATCCTGAGTGCAAGTCTAAACGTATCTTATCTGTTCAGATAGTCCACAACAAGTGA 1422 0.4008 MGAPDLSHHVFEEGEKFEQLIEKRGKMGGEEQGCIPPAFSGIVASMVNKKINLNDSTGQQWKVKVSEVNGSFVFGEGWSRFSSGHGLKVGYLLVLNYIKDLHFDVKIYDTSACEKLGLPEKRNQKKRSRGKIGSPVRDGILVRQELDAPRQCSKVDLVVPQKAKESGQHVLILDHSEEDPCRSKSLEFDQSHEDDGTMKSQNGDLIVSNVDYESNIVEKDAMICSKDTMFEGVLSTEVALDISELRIYGRSASLEADTYTYDKTFNSKIEENKAILSNREAQECQFSKALEVQWDLKFIDAHIHNGKMKKFPVDMTPNLDSSMDEFHLTGEVSKKLKKELVTLNEMEATGLPKEINGLLNSDIFNEDNASHFKPTQLSCVVPHDNELPSCLPLIRKVKVDQQRKMLVFLRDPLRRLWPVYYHEKPHLKLLAHGWLNFSRANNIQPKDECIFEAEVDPECKSKRILSVQIVHNK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00939 473 ProSiteProfiles B3 DNA-binding domain profile. 407 473 IPR003340 GO:0003677
Vian4g00939 473 CDD B3_DNA 49 109 IPR003340 GO:0003677
Vian4g00939 473 SMART B3_2 17 111 IPR003340 GO:0003677
Vian4g00939 473 Pfam B3 DNA binding domain 34 109 IPR003340 GO:0003677
Vian4g00939 473 CDD B3_DNA 407 452 IPR003340 GO:0003677
Vian4g00939 473 ProSiteProfiles B3 DNA-binding domain profile. 35 111 IPR003340 GO:0003677
Vian4g00939 473 Gene3D - 13 113 IPR015300 -
Vian4g00939 473 Gene3D - 367 473 IPR015300 -
Vian4g00939 473 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 35 470 IPR044837 -
Vian4g00939 473 SUPERFAMILY DNA-binding pseudobarrel domain 35 115 IPR015300 -
Vian4g00939 473 SUPERFAMILY DNA-binding pseudobarrel domain 403 453 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00939 35 114 B3 DNA Binding Superfamily AT4G01580 32.500 8.65e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian4g00939 B3 5.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00939 - - vra:106761496 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00939 4 13647091 13650318 Vian4g00939 4 13647091 13650318 ECH